Ipomoea nil (Japanese morning glory): 109162707
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Entry
109162707 CDS
T04663
Name
(RefSeq) ATP-dependent DNA helicase RecQ-like
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109162707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109162707
03400 DNA repair and recombination proteins [BR:
ini03400
]
109162707
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
109162707
Messenger RNA biogenesis [BR:
ini03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
109162707
DNA repair and recombination proteins [BR:
ini03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
109162707
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-GeneID:
109162707
NCBI-ProteinID:
XP_019166938
LinkDB
All DBs
Position
Un
AA seq
895 aa
AA seq
DB search
MENMDSTLKKYFGYSTYRPYQKEIIEKILEGKDCLVVMATGSGKSLCYQAPPLITKKTAI
VISPLISLMQDQVMALKERGIKAEFLSSAQTNRSVQSNAESGLYDILYMTPEKACLLSTS
FWSRLLKSGICLLAVDEAHCISEWGHDFRMEYKQLDRLRDALVEVPFVGLTATATEKVRR
DIMNSLKMKDPHVAIGSFDRKNIFYGVKSFTHGSTFVNELVEEISKYVENANSTIIYCTT
VKNTEEIFSSLIEAGIKAGIYNGQMSNKAREDAHRSFIRDEFYVMVATVAFGMGIDKPNI
RHVIHYGCPKSLESYYQESGRCGRDGIPSICWLYYTRSDFAKADYYCREAQSADQRKAIM
ESFIAAQHYCLLAVCRRKYLLEYFGETCAYDKCGNCDNCTSSNKENDVSREAFLLIACIQ
SCGGRWGLNLPVDVLRGSRSKKILEAQFDKIPFHGLGKELPANWWKALAYQLISHGYLVE
TFDDVYRFVRVSPKGLQFLNSCNPDYQPPLFLPMTSEMVVDEGSGDTSTETRGNNGLAST
EFEGLSQAETQLYKMLLEERMKVAKANGTAPYAICGDVTLKKISLTRPSTKPRLANIDGV
NQHFMKTYGDHFLQSLKHLCEELNLSLDGERCTQNVQPSVSAKILTVPSNKKLTPAKFEA
WKMWHEDGLSIQKIANFPGRAAPVKEQTIFEYILEAAREGYPVDWARFSYEIGVTREMFM
NIASVVSRVGREKLKPIKTELPEEVTYSQIKAYLAMQELGISENVFPSNHQATLATGEQS
KVEEPIDHTSSVSPCEEIHSVSNLQTESTVTDEPDFSPISAKRQKIYAPEGRSPMKLEAT
EESLLSWLKKFDDGASLSDLLEHFNGSTENSLVDLLCNLEGEFLIFRRNDVYKLM
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atggagaacatggattccactctcaagaaatactttgggtattcaacatatcgcccttac
cagaaagaaataatagagaaaattttagaagggaaggactgcttagttgtcatggccact
ggcagtggcaaatcactctgttatcaggcgcctccattgattactaagaagactgctata
gtaattagccctctcatatctttgatgcaagatcaggtaatggcattgaaagagagggga
atcaaagctgagttcctctcgagtgctcagactaatcgtagtgtgcagagcaatgctgaa
tctggcctctatgacattctttacatgactcctgaaaaggcctgtttgctttctacaagt
ttctggtctagattgttaaaatcagggatatgcctgttggctgttgatgaggcacactgc
atttcagagtggggccatgatttcaggatggagtacaagcagttagacagattgcgcgat
gctcttgtggaagttccttttgttggccttacagcaaccgccacagagaaagttcggagg
gacattatgaattccttgaagatgaaagaccctcatgttgctattggctcttttgatcgc
aagaatatcttctatggagtcaaatctttcactcacggttctacttttgttaatgagctt
gtggaggagatctctaaatatgtagagaatgcaaattcgactataatatattgtacaaca
gttaaaaatactgaagagatcttcagctcacttattgaagctggaatcaaggctggaatt
tacaatggccaaatgtctaataaagcacgtgaagatgcacacagatcatttatcagagac
gagttctatgtcatggtcgcaactgttgcttttggtatgggtattgataaaccaaacata
aggcatgtgatacactatggatgcccaaagagtttggagtcttattaccaggaaagtgga
agatgtggccgagatggcattccctcaatctgctggctttactacacaagaagtgacttt
gcgaaagctgattattactgtcgagaagcacaatcagcagatcagcgcaaagctattatg
gaatcgtttattgctgcacaacattattgcttgctggcagtttgtaggagaaaatatttg
ttggaatactttggagaaacatgtgcttatgataagtgtggaaattgtgataattgcacc
agctcgaataaggagaatgatgtgtcaagggaagcatttcttcttatagcttgtattcag
tcttgtggaggtcgttggggcttgaatctgcctgtggatgttcttcgtggatctcgatct
aagaaaattcttgaagcccagtttgataagattccattccatggcctcggaaaggagttg
cctgcaaattggtggaaggcacttgcttaccaattgatttcacacggatatttggtagaa
acttttgatgatgtgtacagatttgtaagggttagtccaaaaggattgcagtttctgaat
tcttgcaaccctgattaccaacctccattgtttctacccatgacttctgaaatggtggtt
gatgagggaagtggagacacatccaccgagactagaggaaacaatggtttggcttctaca
gaatttgaaggattgtctcaggctgaaacacaactctataaaatgctcttggaagagagg
atgaaggttgcaaaagctaatggaactgcaccgtatgcaatttgtggtgatgtaacgttg
aaaaaaataagtttgacaaggccttctacaaaaccaaggctagcaaacatagatggtgta
aaccagcactttatgaaaacatatggcgatcattttcttcaaagtcttaagcatctgtgt
gaagaacttaatctttctctggatggagagagatgcactcaaaatgttcaaccttctgtt
tccgctaagatacttacagtaccaagcaataagaaattaacgccagcaaagtttgaagcg
tggaagatgtggcacgaagatggccttagcatccagaagattgcgaattttcctgggaga
gcagccccagtaaaagaacaaactatattcgagtatatccttgaagctgcacgcgaggga
taccctgttgattgggccagattttcttatgaaattggggtgactcgggagatgttcatg
aacattgcaagtgttgtctcaagagttggtagagagaagttgaaacctattaaaactgaa
ttgccagaagaggtaacctatagtcagattaaggcatatttggcgatgcaagaattggga
atttcagagaatgtatttccatctaatcaccaggctacccttgcaactggtgaacagtca
aaagttgaagaaccaattgatcacacaagtagtgtttctccttgtgaggaaatccattca
gtatctaatctccagactgagagcacggtcacagatgagcccgacttttcacctatttct
gcaaaacgccaaaaaatttatgcgccagagggaagaagtccaatgaaactggaagcaaca
gaggaatccttattaagctggctcaagaaatttgatgatggggcttctctttctgatctt
ttggagcacttcaatgggtccaccgagaattccttggttgatcttctgtgcaatcttgaa
ggtgagttcttgatatttaggaggaatgatgtgtacaagctgatgtaa
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