Ipomoea nil (Japanese morning glory): 109182238
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Entry
109182238 CDS
T04663
Name
(RefSeq) general negative regulator of transcription subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109182238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109182238
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109182238
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109182238
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
109182238
NCBI-ProteinID:
XP_019187897
LinkDB
All DBs
Position
Un
AA seq
831 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPREKAKSETRDWLNNVVSELENQIDSFEAELEGLTVKKGKAKPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYSSLPLDKVEA
LEDLVTIGAPLAKGVSGVVSTKSSIAMTPAQVTVTSPVQQTGSSQEQADEVGSQESASDA
VPRTPPPKSGAVASSAPTTPVGSHASPVAAVTSSSMNVLSAVKDEEIAGFPSQKAPPTLT
EAGLRGIDRHGLSSQPAASISLGSISSLSNNGALGAIPSVPEVTKRNVLGYDERLGSTGM
GQPLVSPLANRTIMSQTAKSSDGIGTNDSGNVGESNVMVGRVFSPSVVPGMQWRPGSSFQ
NQNEVGQFRGRTEIVPDQREKYLQRFQQVQQNNKQFSAQHQNPLLPQFNSQGSSVTPQLG
LGVGVQAAALNSVSSSSLLQQQPDVGHSKVEELQQQVLSEDVSADSAPAPSLAKNLMNED
DMKAYALDAPQGGVGSTLAEQSQLPRDTDLSPGQPLQSNQLSGSLGVIGRRSVADLGAIG
DGLSTPPANPGGVHDQSYNLQMLEAAFYKLPQPKDSERAKSYTPRHPAVTPPSYPQVQAP
IVNNPAFWERLGADNYGTDTLFFAFYYQQNTYQQFLAAKELKKQSWRYHRKYNTWFQRHE
EPKVATDDFEQGTYVYFDFHIANDEQHGWCQRIKTDFTFEYNYLEDDLIVH
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgggagccagtcgaaagcttcagggcgaaattgatcgagtgttgaagaaggttcaagag
ggcgtcgatgtattcgacagcatttggaacaaggtttacgacactgataatgccaatcag
aaggagaagtttgaggcggatttgaagaaggagattaagaagcttcagaggtacagagac
cagattaagacatggattcagtccagcgaaatcaaggataagaaggttagtgcttcttat
gagcaggcactgatggatgctcgtaagcttattgagcgtgaaatggaaagatttaaaata
tgtgagaaagaaacaaagactaaagcattttccaaagaaggcttgggtcaacaaccaaag
acggacccaagggaaaaggctaaatcggagactagggattggttgaacaatgtggttagt
gagcttgaaaaccaaattgatagctttgaggctgaactggagggacttactgttaagaaa
gggaaagcaaagccaccgagattgacgcatctggagacatcaattactcggcacaaagcg
catataatgaagttagagttgattttaaggttactggataatgatgaattgagtccagag
caagtcaacgatgttaaagatttcctggatgattatgtggaacgcaatcaggaggacttt
gacgagtttagtgatgttgacgagctttatagctctctaccattagataaggtggaggct
cttgaagatctagtcactattggtgcccctcttgccaagggtgttagtggcgtagtaagc
acaaaaagttctattgccatgacacctgctcaggtaacggtaacatctcctgtacaacaa
actggttcttcccaagagcaagcagatgaagtaggttcccaagagagtgcctctgatgca
gttccgaggaccccacctcctaaaagtggcgcagttgcttcttctgctccaacaacacct
gttggcagccatgcaagtcctgttgccgcagttacttcatcttctatgaatgtgctgagt
gctgtaaaagatgaggagattgcaggcttcccaagccaaaaagcacccccaacgcttact
gaagctggattaaggggtatcgatagacatggcctctctagccaacctgcagctagtatt
tcacttggttctattagttcactttctaacaatggagctctgggtgctattccttcagtt
ccagaagtgacaaagagaaatgttttgggatatgatgaaagacttgggagtactggtatg
ggacagccactggtttcccctctggctaacagaactatcatgtcacaaactgctaagtct
agtgatggaattggcactaatgatagtggtaatgttggtgagtcgaatgttatggttggt
agggttttctctccttcggttgtgcctggtatgcagtggaggcctggaagttcctttcag
aatcagaatgaagtggggcagttccgtggaagaactgaaattgttcctgaccagagggag
aaatatttacaacgatttcagcaagtacaacaaaacaacaaacagttttctgcacagcat
cagaatccactattgccacagttcaattctcaaggctcctctgtgacacctcaacttgga
ttgggagttggagtccaagctgctgcccttaatagtgtttcttcatcttcattgttgcaa
caacagccagacgtgggccactcaaaggttgaagagttgcagcaacaggtcctatccgaa
gatgtttctgcagattctgctccagcccccagccttgcgaaaaaccttatgaatgaggat
gatatgaaggcttatgcattagatgcacctcagggtggagttggcagcactcttgcagag
caatcccaacttccacgggatactgatctatctccaggccaaccattacaatcaaatcaa
ctgtcaggaagccttggagttattggtcgaagaagtgtagccgatcttggtgcaattggt
gatgggttgagtacaccacctgccaaccctggaggagtgcatgaccagtcatacaacttg
caaatgctcgaggctgctttttacaaacttcctcagccaaaagattcagagcgtgctaag
agctatacaccgagacatcctgccgtgacccctccaagctatccgcaagtacaggcccct
attgttaataatcctgcattttgggaacgactcggggctgataactatggcaccgacacc
ttattctttgcgttttactaccaacagaatacataccaacaattcctggctgcaaaggag
ctgaagaagcaatcttggagataccacagaaagtataacacttggtttcagcggcacgag
gagcccaaagttgccacagatgatttcgaacaagggacatacgtttattttgatttccat
atagccaatgacgaacaacatggctggtgccagaggatcaagacggacttcacatttgag
tataattatcttgaagatgatctcattgttcattag
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