Iodobacter ciconiae: EJO50_08790
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Entry
EJO50_08790 CDS
T05767
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
iod
Iodobacter ciconiae
Pathway
iod03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
iod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EJO50_08790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
iod03400
]
EJO50_08790
Enzymes [BR:
iod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EJO50_08790
DNA repair and recombination proteins [BR:
iod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EJO50_08790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
AAA_25
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AZN36583
UniProt:
A0A3S8ZSU3
LinkDB
All DBs
Position
1997174..2000575
Genome browser
AA seq
1133 aa
AA seq
DB search
MTLPALPLNSQRTQINALHGSGDAWVLSHYANISHPLVVFTSNAQVASRLKEELAFLAPQ
KNIVLFPDWETLAYDHFSPHHDLISERLAALWQIRQNQADVVIVPVQTAMGVLPPVEYLA
AYTFFLKKGEKLDADQLRADMAFAGYSHVTQVYGPGEFSIRGGLIDLFPMGSTLPFRIDL
FDETIETIRTFDVDTQRSLYPVPEIRLLPAREFPLDEKGRNQFRQRFREIFEGDPSKARI
YKEMGNGGTPAGIEYYLPLFFEQTATLFDYLPKDAVLVQHGELLQAAEQFWAETSDRYRN
LSGDKERPILAPKDLYLTPDALFSGLKKHRRIEFITGDSAFTAALPALNVDRRSDNPISK
LTDFIASYSGQILLCAESLGRRETMAQFFAEYALKPKLIESWASIQESKTDKVLLTAAPF
YNGFILTNDSLAIITEANLYEIVAQSRGKRQQKRSNTDAMLRDLSELKIGDAVVHEGHGI
GRYCGLTSMDLGEGETELVVIEYAGSDKLYVPVSQLHVISRYSGGSADAAPLHKLGSGNW
DKSKRKAAEQVRDTAAELLNLYARRAARKGHAFEWDFHDYAAFAAGFGFDETADQAAAIE
AVLIDMRVDKPMDRLVCGDVGFGKTEVALRAAFAAVAGGKQVAVLVPTTLLAEQHFQTFS
DRFSDWPIKVAEISRFRSAKEAATTMKGMAEGTVDIVIGTHKLVQPDVEFSKLGLVIIDE
EHRFGVRQKEQLKALRADVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPNKRLAVKTFL
AKFSDGIIREAVLRELKRGGQVFFLHNEVDTIDNMREKLTALLPEARVGVAHGQMRERDL
EHVMRDFAQQRFNILLCTTIIETGIDIPNANTILMNRADKFGLAQLHQMRGRVGRSHHQA
YAYLLVPEPEALTGDAKKRLEAIQMMDELGAGFYLAMHDLEIRGAGEVLGDSQSGEMQEI
GFSLYSQMLKEAVKSLKKGIEPDLSQPLGVTTEINLRAPALLPAEYCPDVNERLSLYKRL
AHCESNEDLDDLMQELIDRFGLLPAPAKVLLDCHRLRMIAGTLGIAKIDAADNAIVLSFT
TNTVIEPMKIIKLIQNKKNYKMSGQDKLRIEGNWPESTLRVVRVKELLHELSH
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgacactacctgcactcccccttaacagccaacgtacccaaatcaatgccttacacggc
tccggagatgcatgggttttaagccattacgccaatatttcacatcctttagtggtgttt
acgtccaatgcgcaggtggccagccgcttaaaagaggagctggcttttttagcgccgcaa
aaaaatattgtccttttcccagactgggaaacactggcttacgatcactttagcccgcat
catgatttgatttcagagcgcttagcggcgttgtggcaaatccgtcaaaaccaggcggat
gtggtgattgtgccggtacagacagcaatgggtgtcttacccccggtagagtatcttgcc
gcctacactttttttcttaagaaaggcgaaaagcttgatgcagatcagctgcgtgctgat
atggcatttgcaggctacagccacgtaacacaggtgtatgggccgggtgagttttctatc
cgtggcgggctgattgatttattccccatgggctctaccctgccgtttcggatcgattta
tttgacgagaccatcgaaactatccgcacctttgatgtagatacccagcgcagcctctac
cctgtgcccgaaatccgcctactgcctgcacgcgagtttccactggatgaaaaaggccgc
aatcagttcaggcagcgcttcagagaaatctttgaaggcgacccgagtaaagcccgtatc
tacaaagagatgggtaatggcggcacgcctgctgggattgaatactatttaccgctgttt
tttgagcagaccgccacgctatttgattacctgcccaaagacgcagttttggtgcagcac
ggcgagttattgcaagcggccgagcaattctgggcagaaacctcagaccgttaccgcaat
ttatccggcgataaagaacggccgattcttgctcccaaagatctctatctcacacccgat
gccctatttagcggcctgaaaaaacaccgccgtatcgagtttattaccggtgactcagcc
ttcactgcagctttacccgctttgaatgtggaccggcgcagcgacaacccaatcagcaaa
ctcactgattttatagccagctacagcgggcagattctgctctgtgcagaaagcctgggc
cgccgtgaaactatggcgcagttttttgccgaatatgccttaaaacctaagctgatcgaa
agctgggccagcattcaagaaagtaaaacagataaagtactcctgactgcggcaccgttt
tataacggctttattttaactaatgactctttagccattatcaccgaagccaatctgtat
gagatagtggcgcaaagccgtggcaagcgtcagcaaaaacgtagcaatacagatgccatg
ctgcgcgatttatcagaactaaaaattggcgatgccgtggtgcacgaaggccacgggatt
ggccgctattgcgggctcaccagcatggatttgggcgagggtgaaaccgagctggtggtg
attgaatacgcaggcagtgataagctctacgtgcctgttagccagctgcatgtcatcagc
cgttattctggtggcagcgcagatgcagcccccttacataaactgggcagcggcaactgg
gataaatccaagcgtaaagccgccgaacaagtcagggacaccgcagccgagctgcttaat
ctttacgcccggcgcgccgcgcgtaaaggccacgcttttgaatgggattttcacgactac
gccgcctttgccgcaggttttggctttgatgaaaccgccgatcaggctgcagcgattgaa
gccgttctgattgatatgcgagtcgataagcccatggacaggttggtgtgcggcgatgtg
ggctttggtaaaaccgaagtagcactgcgcgcagcctttgccgccgtagcgggtggcaag
caggtggccgtgctggtgccgaccacgctactggccgaacagcatttccagacatttagc
gaccgtttttctgactggccgattaaagtggctgaaatctcgcgctttagaagcgccaag
gaagccgctactaccatgaaaggcatggcagaaggcacggttgatattgtgattggcacg
cataaactggtgcagccagatgtggaatttagcaagctggggctcgtgattatcgatgaa
gagcaccgctttggcgtgcggcaaaaagagcagctcaaagcgctgcgtgccgacgtggat
gtacttaccctgaccgccacaccgattccgcgcacgctggcgatgagcctggaaggcttg
cgtgacttttccgtgattgccaccgcgccgaataaacgcctggcggttaaaactttcctc
gccaaattcagcgacggcattatccgcgaggcggtactgcgcgagctaaagcgcggcggg
caggtattctttttacataatgaagtcgataccatcgacaatatgcgcgaaaaactcacg
gcgctcttacccgaagcccgcgtgggcgtggcacacggccagatgcgcgaacgtgacctt
gaacatgtgatgcgcgactttgcccagcagcgttttaatattttgctctgcaccaccatt
atcgaaacgggaatcgacatccccaatgccaataccattctgatgaaccgcgccgataaa
tttggcctggcacaattacaccagatgcgtggccgcgtgggccgcagccaccaccaggcc
tacgcctacctgctggtgcccgagccggaagccttaacaggcgacgctaaaaaacgcctt
gaagcgattcaaatgatggatgaattgggcgcaggtttttatctggcaatgcatgatctg
gaaatccgcggtgcgggtgaagtactaggcgattcacaatcgggggagatgcaggaaatc
ggcttctcgctttatagccagatgctcaaagaagcggttaaatcgctcaaaaaagggatc
gagcctgatttatcccagccactgggcgtcaccaccgaaatcaatctgcgtgccccggcc
ctgctgcccgcggaatactgccctgatgtaaacgagcggcttagcctctataaacgcctc
gcccattgtgaaagcaatgaggatctggacgacctgatgcaggaattgatcgatcgcttc
ggccttttgcccgcgcctgccaaagtgctgctcgattgccaccgcctgcgcatgattgca
ggcacacttggtattgctaaaatcgacgcagccgacaacgccatcgtcttaagcttcacc
accaatacggtaattgagccgatgaaaatcatcaagcttatccagaacaaaaagaattac
aaaatgagcggccaggataaattgcgtatagaaggcaactggccggaaagcacactgcgt
gtggtgagagtgaaagagctgctgcatgagttaagccattga
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