Ictalurus punctatus (channel catfish): 108258603
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Entry
108258603 CDS
T04658
Name
(RefSeq) cullin-4A
KO
K10609
cullin 4
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03420
Nucleotide excision repair
ipu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108258603
09124 Replication and repair
03420 Nucleotide excision repair
108258603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108258603
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108258603
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
108258603
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul4 complex
Cullin
108258603
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
108258603
TCR (transcription coupled repair) factors
Cul4-CSA complex
108258603
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108258603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
Motif
Other DBs
NCBI-GeneID:
108258603
NCBI-ProteinID:
XP_053532020
UniProt:
A0A9F7R1J1
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Position
26:complement(8067240..8096573)
Genome browser
AA seq
754 aa
AA seq
DB search
MMAEESRQSRSAGFSALVENSNGVSKSPSSKSGTSKKLVIKNFKDRPKLTETYTEDTWLK
LRDAVGAIQNSTSIKYNLEELYQAVENLCSYKVSPMLYKQLRQVCEDHVRAQIHQFREDS
LDSLSFLKRMNRCWQDHCRQTIMIRSIFLFLDRTYVLQNSLLPSIWDTGLELFRTHIVGD
GAVQSRTVEGILEQIERERNGETVDRSLLRSLLGMLSDLQVYKESFENRFLVETDRLYAA
EGQRLMLDRDVPEYLHHVARRLDEENDRVISYLDQSTQKPLISAVEKQLLGEHMTAILQK
GLSTLLDENRVTELTLLYQLFSKVKGGLPVLLQFWREYIKSFGGEIAGSPEKDKDMVQEL
LDFKDKMDNVAHTCFQRNEGFINAMKEAFESFINKRPNKPAELIAKYVDSKLRAGNKEAT
EEELERILDKIMIIFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGA
AFTSKLEGMFKDMELSKDIMIQFKQYMQNQSEPSNIDLTVNILTMGYWPTYTPMDVHLPA
EMVKLQEVFKTFYLGKHSGRKLQWQPTLGHAVLKSEFKEGKKELQVSLFQTLVLLMFNEG
EEFALEEIQTATGIEESELRRTLQSLACGKARVLNKNPRGKDVEDGDRFNFNNDFKHKLF
RIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAVVRIMKMRKTLSHNLLVSELYNQLKF
PVKPGDLKKRIESLIDRDYMERDKESPNQYHYVA
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgatggcagaggagtcccgacagagcaggagcgcgggtttctcagctctggttgaaaac
agcaatggagtgagtaagagcccgagctccaaatccggcacctcaaagaagctggtgatt
aaaaacttcaaagacagacccaagctgacggaaacctacaccgaggacacgtggctgaag
ttgcgcgatgccgtcggcgcgatccagaacagcacatcaatcaaatacaacttggaggag
ctttatcaggcagtggaaaatctttgctcttataaggtctcgcccatgttatacaaacaa
ctccggcaagtgtgtgaggatcacgtgcgagcacagatccaccagtttagagaagactcc
ctggatagtctgtcttttctgaagaggatgaacagatgctggcaagaccattgcagacaa
acaatcatgatccgtagcattttcctctttcttgatcgcacgtacgtcctccagaactcc
cttcttccgtccatatgggacacagggctggagctgtttcgcacacacatagtgggtgac
ggtgcagtccagagtcgtacagtagagggaattttggagcaaattgaacgagagaggaac
ggcgagactgtggatcggagtctcctgcgtagcttactaggcatgctctcagacctacag
gtgtataaggagtctttcgaaaacaggtttctggttgagacggatcgcttgtacgcagct
gagggccagagactgatgttagacagagatgtacctgaatacctgcaccatgtagcacgg
cgcctagacgaggagaacgatcgtgtcatcagttacctagatcagagcactcagaagccc
ctgatctctgcagtagagaagcagcttctgggtgaacacatgactgccattttacagaag
ggtctcagcacgctgttggatgagaaccgtgtgactgagctgactctgctgtaccagctc
ttcagcaaagtgaagggtggcctgcctgtattactgcagttctggagagagtacatcaag
agctttggtggtgagattgctggctctcctgagaaagataaggacatggtgcaggagctg
ctggattttaaggataaaatggacaacgtagcacacacctgcttccagaggaacgagggc
ttcatcaatgccatgaaggaggccttcgagagcttcattaacaagaggcccaacaaacca
gcggagcttattgccaaatatgtagactccaaactacgtgccggtaacaaagaggccaca
gaagaggagctggagagaatcctcgacaagatcatgatcatcttccgctttatccacggt
aaagacgtgtttgaagcgttctacaaaaaagacctagcgaagcgcttgctggtgggcaaa
agtgcctctgtggatgccgagaaatccatgctgtccaaactcaagcatgagtgtggggca
gcgttcaccagcaagctcgagggcatgttcaaagatatggaactctccaaagacattatg
atccagttcaaacagtacatgcagaatcagagtgaacccagcaacatcgatctgactgtc
aacatcctcaccatgggctactggccaacctacacccccatggatgtccatctgcccgct
gagatggtaaaacttcaggaggtgttcaaaacgttctatctcgggaagcacagtgggcga
aagcttcagtggcagcccacgctgggccatgcggtgcttaaatctgagtttaaagagggt
aaaaaggagctgcaggtatctttattccagacacttgttctgctcatgtttaatgaaggg
gaggagtttgcactagaagagatccaaacagctacaggaatagaggagagtgagctgaga
cgcacgctgcagtcgctggcatgcgggaaagctcgcgtacttaataaaaatcccagaggg
aaagacgtggaggacggagaccgcttcaacttcaacaacgacttcaaacataaactgttc
cgcattaagatcaaccaaattcagatgaaggagacggtagaggagcaggtgagcaccaca
gagcgggtcttccaggacaggcagtaccagatagatgccgcagtggtgaggatcatgaag
atgaggaagactctcagccacaaccttctggtgtcagaactctacaaccagctcaagttt
cctgtgaagccaggcgacctgaagaagcgcatcgagtccctcattgatcgagactacatg
gagagagacaaggagagccccaaccagtatcattacgttgcctga
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