Ictalurus punctatus (channel catfish): 108264636
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Entry
108264636 CDS
T04658
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03420
Nucleotide excision repair
ipu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108264636
09124 Replication and repair
03420 Nucleotide excision repair
108264636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108264636
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108264636
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul4 complex
Adoptor protein
108264636
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
108264636
TCR (transcription coupled repair) factors
Cul4-CSA complex
108264636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MMS1_N
CPSF_A
Motif
Other DBs
NCBI-GeneID:
108264636
NCBI-ProteinID:
XP_053533788
Ensembl:
ENSIPUG00000005612
UniProt:
W5UK08
LinkDB
All DBs
Position
4:complement(1053329..1069070)
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AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEIGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLFGCQAPTVCF
IYQDPQGRHVKTYEVSLKEKEFSKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMDGRLFMLLLEKEELIDGSMVLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFFCGNVAHQQLIQITSGSVRLVT
QDSKALTSEWKEPQGRNISVAACNSTQVVLAVGRVLYYLQILSGELKQISSTEMEHEVAC
LDITPLGESSGESSLCAVGLWTDISARVLRLPCFSPLHKEMLGGEIIPRSILMTTFEGSH
YLLCALGDGALFYFGLDLETGTLTERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PKRICYQEVSQCFGVLSSRVEMQDVNGTTAPVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSLVSCKLGKDPAVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSIVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLMDLQNRLNKVIKSVGKIEHSFWRSFNTER
KTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaactacgttgtaacggcgcagaaacccaccgcggtgaacgcctgcatcact
ggtcacttcacttcagcggaggatcttaaccttctcatagcaaagaacacacgtctggag
atctatgtggtcacggcagaaggattacggccggtcaaagaaatcggcatgtacggcaag
atcgccgtcatggagctcttcagacccaaaggtgaaagtaaggaccttctgttcattttg
acggccaaatacaacgcctgcatcttggagtacaagcagaatggagacagcattgatatc
atcactcgtgctcatggaaacgttcaggatcggatcgggcgtccatcagagaccgggatc
atcggtattgtggacccggagtgtcgtatgattggtctgcgtctctacgacggtcttttt
aaagtcatcccgttggatcgggacaaccgtgagctcaaagcctttaacattcgactggag
gagctgcaggtcatagacgttcacttcctgtttggatgtcaggcccctaccgtctgtttt
atatatcaggaccctcagggacgtcacgtgaagacgtacgaggtgtctctgaaggagaag
gagttcagtaagggtccttggaaacaggagaacgtcgaagccgaggcctcgatggttatt
cctgttcccgagccgttcggcggcgctataatcattggccaggagtccatcacgtatcac
aacggagataaatacctggccatcgcacctccgacaatcaagcaaagcacgatcgtgtgt
cacaaccgcgtggacccgaacggctctcgctatctcctgggtgatatggatggaaggctg
ttcatgctcctgctggagaaagaggaactgatcgatggctccatggtgctcaaagatcta
cgggtggaactgctaggagagacatccatcgctgagtgtctgacctacctggataacgga
gtggtgtttgttggatccaggcttggagattctcaactggttaaactgaacgtggacagt
aacgatcagggctcgtacgtggcggttatggaaacgttcactaacctgggaccgatagtg
gacatgtgtgttgtggatctggagcggcagggacagggacagctggtgacctgctctggc
gcttttaaggaaggttctctaaggatcattcggaacggtattggaatccacgagcacgcc
agtattgacctgcctggtatcaaagggttatggcctcttcgctcggaggcgggcagagag
accgacgacatgctggtgctttctttcgttggccaaaccagagtgctgatgctgagcgga
gaggaggtggaggagaccgaacttccggggtttgtcgataaccagcagactttcttttgc
ggaaacgtcgctcaccagcagctcattcagattacttcaggttcggtgcgactggtcacg
caggacagcaaggctttgactagcgaatggaaggagcctcagggaaggaacatcagcgtg
gctgcttgcaactccacccaggtggtgctcgcggtgggacgagtgctctactacctacag
atcctcagtggagaactaaagcagatcagttccacggagatggagcacgaggtggcgtgt
ttggacatcactcctctcggggagagcagcggagagtccagcctgtgtgccgtcggtctg
tggacggacatttcggcccgagtcctccgcctgccctgctttagtcctctgcataaggag
atgctgggtggagagatcattccacgttcgatcctgatgaccacgtttgaaggcagccat
tacttgctgtgtgctctgggagacggcgctctcttctactttggcctggacttggagaca
ggcactttgacggagcggaagaaggtgactctggggactcagcccacggtgctccgtacc
tttcgctctctttccacctccaacgtctttgcgtgctcggacagacccacagtcatctac
tccagcaaccacaagctcgtcttctccaacgtcaacctcaaagaggtcaactacatgtgc
cctctcaactccgagggctaccccgacagcttggctctggccaataacagcactctgacc
atcggcactatcgacgaaatccagaagctccacattcgcactgttcctctgtacgaatca
cccaagaggatctgttatcaggaggtgtcccagtgtttcggcgtgctctccagtcgagtg
gagatgcaggacgtaaacggaaccacggctcccgtacgccccagcgctagcacgcaggct
ctgtcgagcagcgtgagctccagtaagctcttccccagcagcacctctcctcatgagacc
tccttcggggaggaggtggaggtgcacagcctgctcgtggtggatcagcacactttcgaa
gtgcttcacgcccaccagtttctgcccagcgagtacgcactgagcctggtgtcctgtaaa
ctggggaaagatcccgccgtctacttcatcgtcggcaccgctatggtctaccctgaggag
gcggagcctaagcagggtcgcatcatcgtcttccactacacggacggtaaactgcagacc
gtagcggagaaagaggtgaaaggcgcggtctactccatcgtggaatttaacggcaaactg
ttggccagcatcaacagcactgtgcgcctttatgagtggacggcagaaaaagagctgagg
actgagtgtaatcactacaacaacatcatggctctgtatctgaagaccaaaggggacttc
atactggtgggagatctgatgaggtcggtgctgctgctggcctacaaacccatggagggg
aatttcgaggagatcgctcgagacttcaacccgaactggatgagtgcagtggagatcctg
gacgatgataatttcctcggtgcagagaacgcgtttaaccttttcgtgtgccagaaagac
agcgctgccaccaccgatgaggagcgtcagcatttacaggaagtgggtgtgttccacctg
ggtgaatttgtgaacgtgttctgtcacggttccctcgtgctgcagaacctcggcgagagc
tctactcctacacagggttctgtgctgtttggaaccgttaacgggatgatcgggctggtg
acgtcgctgtcagagggctggtacagtttactgatggatttacagaatcgactcaacaag
gtcattaagagtgtgggaaagatcgagcacagcttctggagatccttcaatacggagagg
aagactgaacaggccacgggtttcatcgacggagatctgatcgaaagcttcttagacctg
ggacgagccaaaatgcaggaagtggtcagcacactacagatcgatgacggcagcgggatg
aagcgagaggccacggtggatgaagtgattaagatagtagaggaactcaccaggatccac
taa
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