Ictalurus punctatus (channel catfish): 108266625
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Entry
108266625 CDS
T04658
Name
(RefSeq) TBC1 domain family member 4 isoform X1
KO
K17902
TBC1 domain family member 4
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108266625
Membrane trafficking [BR:
ipu04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
108266625
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
108266625
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Rab associated proteins
108266625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
DUF3350
PID
PTB
DUF4600
Motif
Other DBs
NCBI-GeneID:
108266625
NCBI-ProteinID:
XP_017325678
Ensembl:
ENSIPUG00000014194
UniProt:
A0A2D0R500
LinkDB
All DBs
Position
6:1294048..1326463
Genome browser
AA seq
1206 aa
AA seq
DB search
MEGAEDKGRGRGKEKIFSLWYVGCSALDRRTTLPMLPWLVAEIRRKSESGPVQARLVQLS
LTPPVIRCVPASSSSASVFIFEHKAQCISRFVHNSHDLAYFAYLIRCQPDDPEGEMVCHV
FKACDPDQVSEVISSIRQTSKSALKEENKPRQEAEESFYNSQKFEVLYCGKVTVNHKKAS
STLIDDCIDLFREHESERRRLRLLNGQRSVETPVVFSVGDDPLSASLSEAALTEINEKAG
GMRGAFPESIQEDSGFEQQEFRTRCSSLAGGLQKIPRETGAKVQTRRRHASAPNNVQPSD
ADKNRTMLFQVGRFEVNLISPDSKTVVLEKNFKDISFCSQGVKQTDHFGFICRDVLESGP
SQYTCYVFQCASESLVDEVMLTLKQAFSTAAALQSSKTQIKLCEACPMHDLHKLCERIEG
LYPPRAKLAIQKYLSLLSDNEQADIFERVQKMKPSCDQEENELVILHLRHLCETKQKTHA
HIGEAPQNAVGSESSSAAGRNKLDVLKNKARSSLTSSLENIISRGANRMRMRLGSMGSFD
RQDESPGDSPPGTPPATLDEDPDAPLFRRRAHTFSHPPIKKRISFTELPTQNKVPLHRQQ
SLAPELLQSSPVRVPRKRSVSEGESSFNLHSSFSTSTFLKSFYLGSISSLASLPDSPKSN
GEDRNRRLSGCSTDSVSAVTTRRVSWRQKIFLRVASPINKASASMHKADMDGSELLPLSP
RALQQEQDTLSGLLSSTQSLRGENGRRTTADYRALWKKAIHQQILLIRMEKENQRLEASR
DELHIRKMKLDYQEVGECPTEVQALWEKKLNVPCRTKVQWDKDQIHSALCQGVPKSRRGE
VWLLLSQQYRLRHRLPQRQQPPETSYQDLLKQLTTQQHAILVDLGRTFPTHQYFSAQLGA
GQLSLYNLLKAYSLLDTEVGYCQGISFVAGVLLLHMSEEQAFDTLKFLMYDLGLRRQYRP
DMISLQIQMYQLSRLLHDYHRGLYSHLEEHEISPSLYAAPWFLTLFASQFPLGFVSRIFD
LLFVQGTEVIFKVALCLLSNHEGEILECDSFESIVDYLKTTIPTLRQNQMEETITKALEM
DISKQLHAYEVEYHVLQDEMVDAAPLSEESDRLERLEKTNAQLKKQNMDLLEKLQAARVK
IQSLENSVESFLVRESQMKHMIRSLEQEKANYQKTIERMRSSLPADAADVEMTQLKMNSK
TKAAEK
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atggaaggagcggaggacaaagggagagggagagggaaggagaagatcttctcgctgtgg
tatgtgggctgcagcgcgctggaccggcgcaccacgctgcccatgctgccgtggctagtg
gccgaaatccgcaggaagagcgagtccggtccggttcaggctcggctcgtccagctctcc
ctcacccccccggtgatccgctgcgtgcccgccagcagcagcagcgcgtccgtctttatc
ttcgagcacaaggcgcagtgcatctcgcgcttcgtgcacaacagccatgacctcgcctac
ttcgcctacctcatccgctgtcagccggacgacccggagggcgagatggtctgccatgtg
ttcaaggcgtgcgacccagaccaggtgtccgaggtcatcagcagcatccggcagacctcc
aaaagtgcactcaaagaggaaaacaaacccaggcaggaggctgaggagtccttttacaac
tcgcaaaagtttgaggtgctttactgtggcaaggtgaccgtgaaccacaaaaaagcatcc
tccaccctgatcgacgactgcatcgacctgtttcgggagcacgagtccgagcgcagacgt
ctgcggctcctgaacggccagcgctctgtcgagaccccggtggtcttcagcgtgggagac
gacccgctcagcgcatcgctgtcggaagctgcgctcacagagataaatgagaaagcgggc
ggtatgcgcggcgccttccccgagagcatccaggaggactcgggctttgagcagcaggag
ttccgcactcgctgcagcagcttggcgggtggcttacagaagatccctagagaaacagga
gccaaagtgcaaacgcgtaggagacatgctagcgcacctaacaacgttcagccctctgat
gcagacaagaaccgcaccatgttgtttcaggtgggacggttcgaggtgaatctcatcagc
cccgacagcaagacggtagtgctggagaagaatttcaaagatatctcgttttgctcccag
ggagtgaagcagacggaccattttgggttcatctgtcgtgacgtgttggagtcggggccc
agccagtacacgtgctacgtgttccagtgtgccagtgagtctctggtggatgaggtgatg
ctgactctgaagcaggccttcagtacagcggcagcactgcagagctccaaaacccagatc
aagctatgtgaggcctgtccaatgcacgacctgcacaagctttgcgagcgcatcgaagga
ctgtaccctcccagagcaaagctggccattcaaaaatacctctccctgctgagcgataac
gagcaggccgacattttcgaacgcgtgcagaagatgaagccaagttgcgatcaggaggag
aatgagctggttattcttcacctcaggcacctgtgtgagaccaagcagaagacgcatgcg
cacatcggagaggctcctcagaacgcagtaggttcagagagctcaagtgcagctggacgc
aacaagctggacgtgctgaagaataaagcacgcagctccctcaccagctccctggagaac
atcatttcacggggtgcaaaccggatgcgcatgcgtctaggaagcatgggcagctttgac
cgacaagacgagtctcccggtgattctcctccagggactcctcccgctactttggatgag
gacccggacgcccctctgttccggcgccgcgcacacaccttcagccaccctccaatcaag
aagaggatctctttcaccgagttaccgacccagaacaaggttcctttacacagacagcag
tctcttgctccagagctgttgcagagcagcccggtgcgtgtaccaagaaaacgcagtgtc
tctgagggcgagtcttccttcaaccttcactcctccttctccacttccactttcctgaaa
agtttttacctgggctccatcagctcactggcctccctgccggacagccccaagagtaat
ggggaggacagaaacaggaggctgtccggctgcagcactgactcggtgtctgcagtgact
acacgcagagtgtcttggcgtcagaagattttcctgagggtggcttcacccataaacaaa
gcctcagcctcgatgcacaaggctgatatggacggcagtgagctgctgccgctttctccc
cgtgccttacaacaggagcaggacaccctatctgggctgctctcctccactcagagcctg
agaggagaaaatggacgccgcactactgcagattatagagctctgtggaagaaggccatc
caccaacagattctcctcatccgcatggagaaggagaaccagcgcctggaggccagccga
gatgagctacacatccgcaagatgaaactggattaccaggaggtgggcgagtgtcctacg
gaggtgcaggctctgtgggagaaaaagctgaacgtgccttgcaggaccaaagtgcagtgg
gacaaagaccagatccactctgctctctgccagggtgtcccaaaaagtcggcgaggtgag
gtgtggctgctcctctctcagcagtatcgcctgcgtcatcgtctacctcagcggcagcag
cctcctgaaacgtcctaccaggatctgctcaagcagctcaccacacagcagcacgccatc
ctggtggacctggggcgcacgttccccacgcaccagtacttcagcgctcagctgggcgca
ggccagctgtctctctataacctactgaaggcctactctctactggacacggaggtgggc
tactgccagggcatcagctttgtggctggagtgctgctgctgcacatgagcgaggagcag
gccttcgacacactgaagttcctaatgtacgatctggggctccggcgccagtaccggccg
gacatgatctccctgcagattcagatgtaccagctgtcccggctgctgcatgactaccac
cgtggtctgtattcgcacctggaggagcatgagatcagccccagcctgtacgctgctcca
tggttcctcacgctcttcgcctcccagttccccctcggcttcgtctcgcgcatcttcgac
ctgctatttgtccagggcacagaggtgatttttaaggtggccctgtgtttgctgagcaac
cacgagggagagatactggagtgtgacagctttgagagcattgtagactaccttaagacc
accattcccaccctcagacagaaccagatggaagagacgatcaccaaggctttagagatg
gacatctccaagcagctgcacgcgtatgaggtggagtaccacgtcctgcaggacgagatg
gtggacgccgcgccactttcagaggaatcagacaggctggagagactcgagaagaccaac
gctcagctgaagaagcaaaacatggatctgctagagaaactgcaggctgcacgggtgaaa
atccagagtctagagaacagtgtagagagcttcctggtacgcgagagccagatgaagcac
atgatccgctcgctggagcaggagaaggccaactaccagaagaccatagagcgcatgcgc
agcagcctcccggcagacgcagctgacgtggagatgacccagctgaagatgaacagcaaa
accaaagcagccgagaaataa
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