Ictalurus punctatus (channel catfish): 108266884
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Entry
108266884 CDS
T04658
Name
(RefSeq) histone-lysine N-methyltransferase PRDM9 isoform X1
KO
K20796
[histone H3]-lysine4 N-trimethyltransferase PRDM7/9 [EC:
2.1.1.354
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu00310
Lysine degradation
ipu01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
108266884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108266884
03036 Chromosome and associated proteins [BR:
ipu03036
]
108266884
Enzymes [BR:
ipu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.354 [histone H3]-lysine4 N-trimethyltransferase
108266884
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
108266884
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Meiosis-specific proteins
DSB formation-related proteins
108266884
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
108266884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
PRDM2_PR
zf-C2H2_4
zf-C2H2_jaz
Zn-ribbon_8
SET
zf-C2H2_6
Zn_ribbon_SprT
zf-C2HC_2
zf_PR_Knuckle
ADAMTS_CR_3
Motif
Other DBs
NCBI-GeneID:
108266884
NCBI-ProteinID:
XP_017326194
Ensembl:
ENSIPUG00000014733
UniProt:
A0A2D0R6J8
LinkDB
All DBs
Position
6:1071551..1082817
Genome browser
AA seq
663 aa
AA seq
DB search
MSSKLELPSRPGGGGNVPSSCFSNRQKTPKNKKDTAGFPPKQLRPVIMSSAGDGPHSSRT
SHADDPSQEGETSDGGTSGGTEVCVKKEETLDLHIYNHGENHKNIPEVISTKEEETYNED
YLYCEVCKSFFFNKCEVHGPALFITDTPVPMGVADRARQTLPPGLEIRKSGIPDAGLGVF
NIGETVPVGAHFGPFQGELVDREEAMNSVYCWVVYRSRHCEEYIDAKREMYANWMRYVNC
AHNGEEQNLVAFKYQGKILYRCCRPIDSGQELFVWYDEEYAKDLRHTCDYHRSTKSSTNE
VNNDLLQVFSCSLCTFSCTSQIDLNKHVQSYHYEEYPRQQKSEIIKYEIQVATNGSSDQQ
TSSGSNTPQKEMEEKIHNCSECGKSFTDQNALKAHQCNQTGEKPYRCSYCGKSFNHKSVL
RKHQRIHTGEKPHRCSQCGKSFIQKSDLQQHQRTHTGERPYYCSMCGKSFSHHSHLQLHQ
RIHTGEKPFQCSQCGKRFTQKSNLQVHQRVHTGEKPYHCSHCGKNFTLQSNLQLHQRIHT
GEKPHHCSHCGKSFTHQSTYQRHQRIHTGEKPYYCSECEKCFNHQSHLQRHQRTHTGEKP
YHCSQCGKSFSQQSSLHVHQRIHTGEKPYHCSQCGKRFTYSLTFKTHKCTNTDPLHYLNY
LSN
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccaaactggaattgccctccagaccaggtggtggcggtaacgtgcccagtagc
tgcttctccaaccgtcagaaaacaccgaagaacaaaaaagacactgcaggttttccccct
aaacagctgagacctgttataatgagttcagcaggtgacggaccgcactcctccagaacg
tctcatgctgatgatccttcacaggagggagagacttcagatggagggacatcaggaggg
acagaggtctgtgtgaagaaagaggagacgctagacctgcacatctacaaccatggagaa
aatcacaaaaacatacctgaagttatctccactaaagaggaagaaacttacaatgaagac
tacctctactgtgaagtttgcaaatccttcttcttcaacaagtgtgaggttcacggtccg
gcgctcttcatcaccgatacccctgttcccatgggagtcgctgaccgagccagacaaact
cttcctcctggtctggagattcggaagtccggtattcctgacgcaggcctgggagtgttt
aatataggggagactgttccagttggtgcacacttcggacccttccagggagagctggta
gacagagaggaagctatgaacagtgtctactgttgggtggtatacaggagcaggcactgt
gaggaatacatagatgccaagagagagatgtatgctaactggatgaggtatgtgaattgt
gctcataatggagaagagcagaatctagtggcatttaagtatcaaggaaagattctgtac
cgttgttgtcgacccatcgactcaggacaggagctcttcgtgtggtatgatgaggagtat
gccaaagatctcaggcatacatgtgactaccacaggagcacaaagtcctccacaaatgaa
gtaaacaacgatctgttgcaagtcttctcctgctccttgtgtacattttcctgtacatct
caaattgacctcaacaaacatgtccagagctaccactacgaggagtatccgagacagcag
aaatcagaaattattaaatatgagattcaggtggccacaaatggctccagtgatcagcaa
acttcctctggttctaacacccctcagaaagaaatggaggaaaaaattcacaactgctca
gagtgtggaaagagttttactgatcagaatgctctcaaagctcatcaatgcaatcaaacc
ggagagaagccgtatcgctgctcatattgtggtaagagttttaatcataagagcgttctc
cgaaaacatcagcgcattcacaccggagagaagccgcatcgctgctcacagtgtggcaag
agttttattcaaaagagtgatctccaacaacaccagcgcactcacactggagagaggcca
tattactgctccatgtgtgggaagagtttttctcatcatagtcatctccaactacaccag
cgcattcacacaggagagaaaccgtttcagtgctcacagtgtgggaagcgtttcactcaa
aagagtaatctccaagtccatcagcgtgttcacacgggggagaagccgtatcactgctca
cattgtgggaagaattttacccttcaaagtaatctccaactacatcagcgcattcacacg
ggagagaagccgcatcactgttcacattgtggtaagagttttactcatcagagtacttac
cagcgacaccagcgcattcacacaggagagaaaccgtattactgctcagagtgtgagaag
tgttttaatcatcagagtcatctccagcgacaccagcgcactcacacaggagagaagccg
tatcactgttcgcagtgtgggaagagtttctctcaacaaagttctcttcatgtacaccag
cgcattcacacaggagagaagccgtatcactgctcacaatgtggaaagaggtttacttat
tcacttacgtttaagacgcacaagtgcactaacacagacccattacattatttgaattat
ttgtcaaattag
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