Ictalurus punctatus (channel catfish): 108267076
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Entry
108267076 CDS
T04658
Symbol
col14a1a
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ipu00535
]
108267076 (col14a1a)
Proteoglycans [BR:
ipu00535
]
Extracellular matrix (ECM) proteoglycans
Others
108267076 (col14a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
NDNF
Arylsulfotran_N
Motif
Other DBs
NCBI-GeneID:
108267076
NCBI-ProteinID:
XP_017326513
Ensembl:
ENSIPUG00000008935
UniProt:
A0A2D0R7E9
LinkDB
All DBs
Position
1:12877888..12993029
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AA seq
1856 aa
AA seq
DB search
MTAWWLLIFLSLVQFPGPTKGQIVGPRRLRFKVLGPDKLQVLWKEPKGKYDGYRFIYNSV
PDGERNELRIGKGQTKAIINDFNPMKEYAVKVIAVSGSQQSRALEGSFAAQGREFDRENT
PPQRIKEVPTEAGIQLSGVDQFVCTTSAVADIVILVDGSWSIGRLNFRLVRTFLENLVNA
FDVGIDKTRIGLAQYSGDPRIEWHLNAFTTKESVIDAVKNLPYKGGNTLTGLALTYILKN
SFKPESGSRSNVPKIGILITDGKSQDAVDIPAQNLKYAGVEVFAIGVKNADENELKVIAS
EPHDTHTYNVADFSIMDTIVEGLTKTVCDGVEQQDREIKRDSVPEDTPNAPQDLVTSEVT
ARSFRVSWSHAPGSVLKYRVIYYPSKGGQPEEVVVDGTETSAVVKDLSSLTEYEIAVFAV
YTDSASEALRGRETTLAMPVVSGLELYDVTHNTMRARWNPTEGVSGYMLVYAPLSSEAID
ETEVKVADTVTDFGLLGLSPDTEYTVTVYAMFGEEASDPATMQETTLALRAPRNLRVTEV
DHNSVRLNWDTPSSAVKGYRLKYGQSNGAQTNEVETGPVSNVYLRNLASQTEYTVSVFAV
YDGDQSEPLKGVFTTKLVPAPRTIRIDEVTPDSFRVSWTQPGDGVKLYKLAWRPFGGGDT
KQVAVSGDINTYVVNDLSPLTEYEVLLSAIYRDEAESGAVPALETTLPMPATTAFPSTTP
PVTRLGVTNLLVDDETTSSLQVSWDIDDADVEEYRVTYVSERGDREEESVLVPGNRKSVM
LQPLLSDTEYKITVNPIYPEGEDSAFSLSSIGRTLPLTAPNNLRVSEEWYNRFRLTWDTP
ASPTMGYRIIYQPTSESGHALETFVGEDVNTLLILNLLTGTEYSVKVISSYTTGSSEALT
GIARTLFLGVSGLRTYQVQMNSMCAQWQPVSQASLYRVIIESLHNGHREEHSVSGGASRQ
CFFNLSPNTQYKISVYTQLQSMEGPAVTIVDTTLPAPTQPPTPPPTTAPIPTIPPAKEVC
KAAKAELVFLIDGSWSIGDDNFQKIIRFLYSTTGALDIIGPEGTQVAIVQFSDDARTEFK
LSSYRDKESLLDAVLRITYKGGNTKTGRAIKHVKESIFTEEAGVRRGIPKVLVVLTDGRS
QDDVNKISKDLQTEGYIIFAIGFADADYGELVNIASKPSEKHVFFVDDLDAVNKIEEQLI
TFVCEAATATCPSLLMSGNTLAGFRMMEMFGLVEKDYSNVQGVSMEPGTFNSFPCYRLHK
DALISQPTKYLHPEGLPSDYTVSVLFRILPETPQEAFALWEILNKANEPLVGLILNNGEK
TLIFFNYDYKGDFQTVIFEGPDIRKIFYGSFHKLHVAISKTSAKVVIDCKIVGEKPISAA
GNITTDGMEVLGRMVRSRGSRDNSASFQLQMFDIVCSTSWASRDKCCELPGLRVEKDCPA
LPHACTCSQDSKGPPGPTGPPGGPGIRGSRGDRGEPGSVGPQGPTGEIGPPGPQGPPGPQ
GPSGHSIQGPPGSAGEKGEKGDSGLPGPQGVPGASGGPGRDGRPGQRGLPGKDGPQGQHG
PPGPIGSPGAPGAPGTTGPPGPHGDHGPPGPHGTKGERGERGDMQSQAVVRTIARQVCEQ
LIQSHLSRYNSILNQIPSQSVSVRTVPGPPGEPGRPGPPGPQGEQGPSGRPGFPGGNGLS
GRPGERGLPGEKGEKGSPGVGTQGPRGLPGPPGPPGEGRTGSQGLPGRPGTQGTPGHPGS
PGKPGAAGPPGYCDQNACLGYNIGVQQLPPSSYQNYGPTDTNDEEEQEEEDPFGGYRRYP
PQYHEPSYPNPRVAQPGTAYPGAMMRERGTHRFSRSLTERSVAQTTTQEEEDKSAH
NT seq
5571 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgtggtggctgctcatattcctgtcactggtgcagtttccaggacctacaaag
ggacaaattgtaggcccacgaagactgcgatttaaagtcctgggtcctgacaagttgcaa
gtgttatggaaagagccaaagggaaaatacgatggctatagatttatttacaacagtgtg
ccagacggcgagaggaacgagcttcgaattggaaagggtcaaaccaaggcgataataaat
gacttcaatcccatgaaggagtatgcagtcaaggttatcgctgtgagcggaagtcagcaa
agcagagcacttgaaggaagctttgcagctcagggccgggaatttgacagagaaaacaca
ccaccacagagaataaaggaagtgcctacagaggctggtattcaactatctggagtggat
cagtttgtgtgcaccacatctgcggtggctgatatcgtcatcctggtagacggttcgtgg
agtatcggcaggctcaatttccgtctggtgcgcacattcctggaaaacctggttaatgct
ttcgatgtgggaattgataaaacccgtataggattggcccagtacagtggagatcccagg
attgagtggcaccttaatgcttttaccactaaagagtctgtcattgatgctgttaagaac
ctgccatacaaaggaggaaacacactcacaggtttggcccttacatacattctgaagaac
agcttcaaaccagaatctggttctcgaagcaacgttcctaaaatcgggatcctcatcacc
gatgggaaatctcaggacgccgttgacatccctgcccagaacttgaagtacgccggggtt
gaggtcttcgccattggggtaaagaacgcagatgaaaatgagttgaaggtcattgcttct
gagccacacgatacgcacacgtacaacgtggccgacttcagcatcatggacaccatagtg
gagggtctgaccaagactgtgtgcgacggtgtggaacaacaagacagagagatcaaaaga
gattcagtccctgaagacacaccaaacgctcctcaggacttggtgacgtctgaagtgact
gcgcgaagtttccgtgtgtcctggagccatgcgccaggcagtgttctgaagtaccgtgtg
atttactatcctagcaaaggaggtcagccagaagaagttgtggtggacggcaccgagacc
tcagcagtggtgaaagacctcagctccctgactgagtatgagatcgctgtgtttgctgtg
tacacagactcggccagtgaggctctcaggggcagggagaccacactggctatgcctgtg
gtcagtggtctggagctgtatgatgtgactcacaacaccatgcgtgctcgatggaaccct
acagaaggggtttctgggtacatgcttgtgtatgcacctctaagcagtgaagctattgat
gagactgaggtcaaagtagcagacaccgtgacagactttgggctgttgggtttaagtccg
gatacagagtacaccgtgacagtttacgccatgttcggagaagaggccagtgatcctgct
actatgcaggagaccaccttggctctgagggctcctcgtaatcttcgtgtcactgaggtg
gaccacaattcggtgcggctcaactgggacacaccgtcaagcgcagtcaaaggctatcgg
ctgaagtacggccaaagtaacggtgcacaaactaatgaggttgaaacaggtccagtttcg
aacgtgtacctaaggaacctggcctctcaaacagagtacacagtatctgtgtttgctgtg
tatgatggggatcagtcagaacccctgaagggagtcttcaccacaaaactcgttccagct
ccacggaccattaggattgatgaggtgacaccagatagtttccgggtgagctggacacaa
ccaggggacggcgtcaagctttataaacttgcctggagaccctttggaggaggagacact
aaacaggtggccgtatcaggcgacataaacacctatgtggtgaatgatctttctcctctt
actgagtatgaagtgctgctgtctgctatctacagagatgaggctgagagcggtgctgta
cctgcattagagaccacactgcccatgcccgctaccacagccttcccatctacaacccca
ccagtgacgcggctgggagtgactaacctgctggtggacgatgagaccacgagcagtctg
caggtcagctgggacattgatgatgcagatgtggaggagtacagagtgacctacgtcagt
gagagaggagaccgtgaagaggagtcggtgctggtcccaggcaatagaaagagtgtgatg
ctgcagcctctcctctcagacacagaatacaagatcacggttaaccctatttatcctgag
ggggaagatagtgcattctctctgtcctccattggccgtacattaccactgactgcacct
aacaacttgagggtgtctgaggaatggtacaaccgcttccgcctcacctgggacacacct
gcctcacccaccatgggctacaggatcatctaccagcctacttctgagtcgggtcatgct
ctggagacgtttgtaggagaagatgtgaacacactgctgatcctcaacctgctgactggc
actgaatacagcgttaaggtcatttcttcatacacaacaggctctagtgaggctctcacc
ggcatagccaggacactgtttctgggagtcagtgggctcagaacataccaggtgcagatg
aacagcatgtgtgcacagtggcagcctgtcagccaggcctccctctacagggtcatcata
gagtccctgcacaatggccaccgagaggagcacagtgtaagtggtggagcctccaggcag
tgtttcttcaacctgtcgcctaacacgcagtacaagatcagcgtctacacacagctccag
agcatggagggccctgccgtcaccatcgtggacaccacacttccagctccaacccagcca
ccgactccacctcccaccaccgccccgattcccaccatcccaccagctaaagaagtttgt
aaagcagccaaagcagagctggtgttcttgatagacggctcctggagcataggagatgac
aacttccagaagatcatccgcttcctatacagcaccactggcgctttggatatcattggt
cctgaaggaacacaggtggccatcgttcagttcagtgatgatgccaggactgagttcaag
ctcagctcctacagggacaaggagtctttgctggacgctgtgctgcgcatcacctataag
ggaggaaacaccaaaacaggtcgagccattaagcatgtgaaggagagcatctttacagaa
gaggctggtgtgaggaggggaattcccaaagtcctggtggtgctcacagatggccgctca
caggacgacgttaataagatctccaaagacctacagacggagggttacatcatctttgcc
attggctttgctgacgcggattacggggagctggtgaacattgcaagcaagcccagcgag
aaacatgtcttctttgtagacgatctggatgcagtcaataaaatcgaggagcagctgata
acatttgtgtgtgaggcagcaacagccacttgtccgtctttgctgatgagtgggaatacc
ttggcaggtttccgtatgatggagatgtttgggctggtggagaaggactacagtaatgtg
cagggtgtttccatggagcctggaactttcaacagtttcccttgctacaggctgcacaag
gatgctctgatctcacagccaaccaagtatctacacccagagggactcccttctgactac
accgtgtcagtgctgttccgcatcctgccagaaactcctcaggaggcctttgcattgtgg
gaaattctcaataaagccaatgaacccctggtgggtctcatcctgaacaatggtgagaaa
acattgatattttttaactatgactacaagggcgatttccagacagtgatctttgaagga
cctgacatcagaaaaatcttttacggcagttttcacaagctccatgtggcaatcagcaag
acgtctgcgaaggtagtgatcgactgtaagatagtgggtgagaagcccatcagcgctgct
gggaacatcaccacagatggaatggaggttctgggccgaatggtgcgctcacgtggcagc
agggacaactcggcatcgtttcagcttcaaatgtttgatattgtctgcagtacatcatgg
gccagtcgagataaatgctgtgagctcccaggcctgagagtagagaaagactgtcctgct
ctgcctcatgcatgcacctgctcacaggacagtaaaggaccaccaggacccactggacct
ccaggtggtcctggtataagaggctcaagaggtgaccgaggggaaccaggctcagtggga
cctcaagggccaactggtgaaattggacctccaggacctcaggggcctcctggaccgcag
gggccaagtgggcactctatccagggaccaccaggatctgcaggagaaaaaggagagaaa
ggtgactcgggtctgccaggtcctcagggtgtaccaggagccagtggaggacctggcaga
gacggccgaccgggacagaggggtttgcctgggaaagatggaccacagggacagcatggc
ccaccaggacctattggcagtccaggtgctcccggagctccaggaaccactggaccccca
ggaccacatggtgatcacggaccacctggtcctcatggtaccaaaggcgagcgaggggag
aggggtgacatgcagtctcaggcagttgtccgcactatagccagacaagtgtgtgaacaa
ctaattcagagccacttgtcacgctacaactcaatcctgaatcagatccccagccagtct
gtgtcagtccggacagtgccaggtcctccaggggaaccaggccgtcctggccctccgggg
ccacagggagagcaggggccttcaggcagaccaggcttccccggaggtaatggactgagt
ggccgtccaggagagagaggcctcccaggagagaaaggagagaaaggcagtccaggtgtg
gggacacagggaccacgtggcctcccaggacctccaggtcctccaggtgagggccggaca
ggaagccagggtcttccaggcaggcctggaactcagggcactccgggtcaccctggaagt
cctggaaagcctggtgctgctggaccaccaggttactgtgaccagaacgcctgcttaggg
tataacataggagtacaacagttacctcccagttcctaccaaaactacgggcccactgac
actaatgacgaagaagagcaggaggaagaggacccgttcggtggataccgccgctaccca
ccccagtaccacgagcccagctatccaaaccctcgtgttgcccagcctggcactgcttat
cccggtgccatgatgagggagcgaggcacgcaccgcttctcccgcagcctgactgagagg
agtgtagctcagaccacaacacaagaggaagaagataaatctgcacactga
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integrated database retrieval system
