Ictalurus punctatus (channel catfish): 108270370 Help Entry 108270370         CDS       T04658                                  Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism ipu  Ictalurus punctatus (channel catfish) Pathway ipu04115   p53 signaling pathway ipu04145   Phagosome ipu04148   Efferocytosis ipu04350   TGF-beta signaling pathway ipu04510   Focal adhesion ipu04512   ECM-receptor interaction ipu04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:ipu00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     108270370   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     108270370  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     108270370    04148 Efferocytosis     108270370   09143 Cell growth and death    04115 p53 signaling pathway     108270370   09144 Cellular community - eukaryotes    04510 Focal adhesion     108270370   09142 Cell motility    04820 Cytoskeleton in muscle cells     108270370  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:ipu04131]     108270370   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ipu00536]     108270370 Membrane trafficking [BR:ipu04131]  Endocytosis   Phagocytosis    Opsonins     108270370 Glycosaminoglycan binding proteins [BR:ipu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    108270370 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_ADAMTS EGF_3 cEGF Laminin_G_3 TSP1_CCN EGF Motif Other DBs NCBI-GeneID:  108270370 NCBI-ProteinID:  XP_017332472 Ensembl:  ENSIPUG00000019167 UniProt:  A0A2D0RPN7 LinkDB All DBs Position 9:9462344..9472142 Genome browser AA seq 1171 aa AA seqDB search MLTALCLLLMLCSSQGSGIAESREDNSVYDLFELAKVHKKHHGVSLVKGPDPYSPAYKIL NPNIIPAIPERVFKDLIYSIQEEKGFLFVANIKQAKNTRGSLFSVERRDGSGSIFELVSN GNADTLDLIYATANGHHEISIEDAQLASGSWMNITLFVQEDRAQLYIGCEEINTRELDVP IHQILTQDVADVSVLRIGKGAVKSRFMGVLQNARFVFRTTLETILRNMGCESSSFIIDVV TLDNPVNGSSPAIRTDYTGHKTKDLQDICGFSCEDLAGMFKELKGLGVVVKQLSNQLHQV TAENARIKTHIQNYSGVCLHNGIRYKDKDEWTVDSCTHCTCQNSATICREISCPLMPCAN ATVPDGECCPRCGTLNDYPDDGWSPWSEWTYCSVTCGRGIQQRGRSCDRINSNCEGTSVQ TRDCHLQECDKRFKQDGGWSHWSPWSSCSVTCGMGVITRIRLCNSPTPQMGGKDCQGEGR QTEPCKMSPCPINGDWGPWSLWDSCSVTCGGGLQSRHRLCNNPVPKYGGKECTGDSKGTR ICNSQDCPIDGCLSNPCFAGAKCTSFPDGSWKCGECPVGYTGDGIHCEDIDECKMVPDAC FMLNGVHRCENTNPGYNCLPCPPRYSGTQPFGRSSDQAMANKQVCAPRNPCEDGSHDCNK KANCIYLGVFSDIMFRCECKPGYAGNGYICGEDTDLDGWPNSDLHCVENATYHCKKDNCP SLPNSGQEDYDKDGIGDACDYDDDNDGIPDDRDNCPFVFNPRQYDQDQDEVGDRCDNCPY NSNPDQIDTDKNGEGDACAIDIDGDGILNENDNCPYVYNVDQRDTDKDGVGDHCDNCPLA HNPDQIDSDSDNVGDKCDSNQDIDDDGHQNSLDNCPYIPNANQVDHDKDGKGDACDHDDD NDGVPDEKDNCRLAFNPDQLDSDGDGRGDICKDDFDQDNVPDILDVCPENFAISETDFRR FQMVPLDPTGTSQIDPNWVVRHQGKELLQTVNCDPGIAVGYDEFNAVDFSGTFFINTDRD DDYAGFVFGYQSSSRFYVVMWKQITQTYWSHIPTKAQGYSGLSIKVVNSTTGPGEHLRNA LWHTGDTAGQVRTLWHDPKKIGWKDFTAYRWTLIHRPKTGLIRVIMYEGKKIMADSGNIY DMTYAGGRLGLFVFSQEMVYFSDLKYECRDV NT seq 3516 nt NT seq  +upstreamnt  +downstreamnt atgttgaccgcgttgtgtttactgctgatgctgtgcagttcacaaggcagcggaatagca gagagccgagaagacaacagcgtgtatgatttatttgaactcgcaaaagtacataaaaaa caccatggggtgagcctagtgaagggacccgacccttacagccctgcttacaaaattctc aaccccaacattatccctgccatccctgagcgtgtcttcaaggatctcatatactccatc caagaggagaaaggcttcctattcgtggccaacatcaagcaagccaagaacaccaggggc agcctgttctctgtggagaggagagatggctctggttccatttttgagctcgtctcaaat gggaatgctgatactttagatctgatttatgccacggcaaacgggcaccatgagatctca attgaagatgcacagctggccagtggaagttggatgaacatcaccctgtttgtgcaggag gaccgtgcacagctctatattggttgtgaagagataaacacaagggaactagatgtgcct atccaccagattctgacgcaggatgtggctgatgtctctgtccttaggattggaaaagga gcagtgaaaagcagatttatgggagtgctccagaacgcacgctttgtgtttaggaccact ttggagacaatccttcgtaacatgggatgtgagagctcctcgttcatcattgatgttgtg accctggacaacccagtcaatggctccagtccagctatacgcacagattacactggacac aagaccaaagatctccaggacatctgtggcttctcttgtgaagacttggccggcatgttt aaggagctcaaggggcttggtgtggttgttaagcaactgtcaaatcagctccaccaagtg actgcagaaaatgctcgaataaagacccatattcagaactacagtggggtttgcctgcat aatggcattaggtacaaagacaaggacgagtggacggtggacagctgcacccactgcacc tgccagaactctgccactatttgccgggaaatctcctgccctctcatgccttgtgccaat gccactgtgcctgatggtgaatgctgcccacgttgtggaactctgaatgactatcctgat gatggctggtctccctggtctgagtggacttactgctcagtgacctgtggccgtggcata caacaacgtgggcgctcatgtgatcgcatcaacagcaactgtgagggtacctcggtgcag accagagactgccacctgcaagaatgtgacaaacgcttcaagcaagatggaggctggagc cactggtctccctggtcctcatgttcagtgacctgtggcatgggtgtcatcactcgcatc cgcctctgtaactcacccaccccacaaatgggaggcaaagactgtcaaggagaaggcaga cagacagaaccatgcaagatgtccccttgcccaatcaatggagactgggggccatggtca ctttgggactcttgctctgtcacttgtggtggtggactacagagcagacatcgcctttgt aacaatcctgtgcccaaatatggtggaaaagagtgcacaggtgactccaaaggcacccgc atttgcaactctcaagactgtcccattgatggctgtctttctaacccttgctttgctggt gctaagtgcaccagctttcctgatggttcttggaagtgtggggagtgtccagttgggtat actggagatggaatccattgtgaagacattgatgagtgcaaaatggttcctgatgcatgc ttcatgctcaatggagtccatcgttgtgagaacactaatccgggctataactgcctacca tgtcctccacgctactctggaactcagccttttggtaggagcagtgatcaagctatggca aacaaacaggtctgtgcaccaaggaacccatgtgaagatggcagccatgactgtaacaaa aaggccaattgtatttatttgggcgttttctctgacatcatgtttcgctgcgaatgcaag ccaggctatgctggtaatggttatatatgtggagaggacactgacctggatggctggccc aacagtgatctccactgtgttgagaacgccacctaccactgcaagaaggacaactgccct agccttcccaactctgggcaagaggactatgacaaagatggaattggggatgcttgtgat tatgatgatgacaatgatgggatccctgatgatagggacaactgcccatttgtcttcaac ccaaggcagtatgatcaagaccaagatgaagtcggtgatcgctgtgataactgcccatat aacagcaatccagaccagattgataccgataaaaacggagaaggcgacgcttgtgcaatt gatatcgatggtgatggtattctgaatgaaaacgacaactgcccatacgtgtataatgtt gaccagagagacactgacaaagatggggttggagaccactgtgacaactgtccattggcg cacaaccctgatcagattgactctgattcagataatgtgggtgacaaatgcgacagcaat caggacattgacgacgatggtcaccagaatagtctggacaactgcccatacatccccaat gccaaccaggtcgatcatgacaaggatggcaagggtgatgcatgtgaccacgatgatgac aatgatggtgtgcctgatgagaaagacaactgtagattggcctttaatccagatcagtta gactctgatggtgatggacggggtgatatttgcaaggatgactttgaccaggacaatgtc cctgatattttggatgtttgtccagagaattttgccatcagtgaaacagatttccgtagg ttccagatggttcctctagaccctactggaacttcacaaattgaccctaactgggtggtc cgccaccagggtaaagagcttcttcagacagtcaactgcgaccctggtattgctgttgga tatgacgaatttaatgcagtggatttcagtggaaccttcttcatcaatactgacagagat gacgattatgctggatttgtgttcggctatcagtccagttcccgcttctacgtggtgatg tggaaacagatcacacagacctattggtctcacatacccacaaaagcacagggctactct ggactgtccatcaaagtggtcaattccaccacaggtccaggagaacaccttaggaatgca ttgtggcatactggagacacagcaggacaggtgcgcactttgtggcatgaccccaagaaa attggctggaaggatttcactgcctacagatggaccctcatccatagacccaaaactgga cttatcagagtcatcatgtatgaaggcaagaaaatcatggcagattctggaaatatatat gacatgacatatgctggtggaagacttggcctctttgttttctctcaggagatggtttac ttctcagacctcaaatatgaatgtagagatgtctaa

DBGET integrated database retrieval system