Ictalurus punctatus (channel catfish): 108272596
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Entry
108272596 CDS
T04658
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6 isoform X1
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
108272596
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
108272596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
BRK
ResIII
DEAD
HDA2-3
MUN
Motif
Other DBs
NCBI-GeneID:
108272596
NCBI-ProteinID:
XP_053540431
Ensembl:
ENSIPUG00000003692
UniProt:
A0A9F7RP04
LinkDB
All DBs
Position
12:4278652..4395293
Genome browser
AA seq
2938 aa
AA seq
DB search
MSATHILMHTSATSATTASEQNAQTTFSIGHFGKEQIRIIDGPSNHCVAHAKLSGMREVV
QGSSSPSPHLSVSPVNSEEDDGGGGPRVRKKRKKKDKKDTREDRECNNRPKKKKVQKEGK
GLLLKKSKALNELKETKKVEGKVVKDPKKVKKVQEVKSKTQGKDVTAPPRQRGRKPKEQS
VVPLEKRKKGKRKSDALQEAAESDDTASLCTLATGGEESTDPMDNTKRRSGRQVKRRKYN
EDLDFKVVDDDGETIAVLGAERIPALSSSTLAWQAEEPPEDEANIIEKILSVRTIKKETF
HGEPVEESEEFYVKYRNFSYLHCKWATLEELEKDPRIHQKIKRFRNKHAQMKHIFSELDE
DLFNPDYVEVDRVLEIAITTDTETGEEVTHYLVKWCSLSYEESTWELQEDVDPVKIREFE
ELRKIPELTSVERPSPEQWQKLEHSREYRNGNQLREYQLEGMNWLLFNWYNRKNCILADE
MGLGKTIQSITFLYEIFLMGLRGPFLIIAPLSTITNWEREFRTWTEINVIVYHGSQISRQ
MILQYEMYHRDEQGNIMPGVFKFHGIITTFEMIMADCPELKKVNWRCVVIDEAHRLKNRN
CKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNFLEPVQFPSESTFLEEFGDLKTEEQ
VKKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLAKGAN
QHNMPNLINTMMELRKCCNHPYLITGAEEKILDSFRKTHNPDAPDFQLQAMIQAAGKLVL
IDKLLPKLIAGGHKVLVFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCK
VDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRL
ITRNSYEREMFDKASLKLGLDKAVLQDINRKGSLNGVQQLSKMEVEDLLRKGAYGALMDE
EDEGSKFCEEDIDQILQRRTQTITIQSEGKGSTFAKASFVSSGNRTDISLDDPNFWQKWA
KIAELEIDSKEEKESLVIDTPRVRKQTRHYNSFEDDELMEFSELDSDSEERPCRSRRLGE
RNKRYLRAECFRVEKNLLIFGWGRWKDILNHGRFKWHLTERDVEVLCRALLAYCVRHYRG
DDKIKSFIWDLITPTKDGHNQALHNHSGLSVPVPRGRKGKKLKNQLSPPELKNADWLVHC
NPEVVLQDDSYKKHLKQHCNKVLLRVRMLYYLKAEVLGEAANQALEGVSSSKLEVALPEV
DYMEIPTGWWDAEADKSLLIGVHKHGYERYNAMRADPQLCFLERVGMPDVIALTAEQSGA
EVAPDVHDSVSKSDDIKEEVDGKPEGMEDKEKQKQTNSFSEDTEKHDSSLGVTRPDGLSE
EVVEQGQALWPTASALTARLRRLITAYQRYTRREPFRHEILGQEGIGPVAWQLGEELRRC
MTNSDPLFLEWQRRWTRREQADFYRTVSSFGVVYDPEKKVFDWRQFRIFARLERKTDESL
ERYFWSFVSMCRTACRLPPRKDEGLVDPTLCIEPITEERAARTLYRIELMRKVREQVLNH
PLLEERLKLCRPSLYLPVWWECGKHDRDLLNGVAKHGLSRTDFYILNDSHLSFLETYRNY
VQKENHGNPVSSLPPQHCYLGHCHSPQPTEYHHTLFHSTQIHQHMHAHGHHQASEVAAAS
ESESTLTMPANSRESFLDCPTINDSLDLGSLQHEGLASGSLHSKTSKEPFNGFPFNSTSA
GQSMLNSYDVQGTQGDMTDSIDGKLRNDVLVGEQGSSEETGLMAPSVELNELQTPWGSSD
HAETTDIFNEGDPILGEPSLETEFLDHAQSEDGQEREDPLTGCLSIPSSDSQSDHVEPLA
PSFMLFKDLNTGETSMEQPDLSASPPEYVAPQPLALSDVGIDQAGSIGEELETKLCDSDI
IHCNPSSEDRAEHVEYQFKKEETSEGGHSNLETDQKLKEIENKANSVPSLETLMENHLEP
LKVECDMPSEDHLKDHCQVYLEESCEKLLMEPDKVPLTEPFDIPCKATLEELLEGSSHDP
SEKLLVKEASGKPLENSLELVENSPANTTISSHTLPSSFPLFTTFPTPAPDHCVFPDPEA
DHDIKQELLLGSIESEVKPKPDSTTLTPHLEQAADMEVKVEMKEGETKTTALLGDSFVEA
TQFDPSICEVAGSLHDPKEPTIARLLQEKPHYSFSEWPKDRVIINRIDSICQAILKGKWP
SPSHQYESPNSVINTCMSNSAQLRAGFLPARIPLPQDLNLNIPHSIPHIHKERLVTPAFL
SELKRSKCRFEFNTEVPVKPIDLGEKIQLGIPHHGGTLLLNGWQEAAMDLSNPAEIAFSR
EAESMRHVTHAVQSAPHKMPNLSSMEGLMGLDMAGILQAGLVHPVTGQIVNGSLRRDDSI
MRRRRGRRRNVETLDLGLMKEQDINLTKGKGQPETVNHPIVSSTSSQPDCLTHPTSAPPP
SESLTMSFDREAASKGLMEWLRQNPSYRMELPAFSMSQTASMLHSFAERPKQRRHRCKDP
TKLDVNSLTGEERVPVVHRNTGRRLGGAMAPAIKELSQWLDANLEYFVAPDWADVVKHSG
FLPEGKFTRILTEPVNRDTSTRRRGRRPRSEMPKAPELPAGIGPLFMNDGLIGMDLVNLP
NLRNVPGIPISGLMGFPPGLATSLQGEDTKNGLSMLPMMLHSMSTVQPPMYGTHLSGMIN
QSLSATASTVTTAASSSSTATVTSISSATVALSPSPAVSSSTATSKERASPEPSTERRSM
DERTLGENEKQMLPAVPSPTVTSSSASITSSGSHLTFNPFLIPGMPHGLLYPHMFLPHGS
IMALPSASDSTGITKQKKKKIRDEGRVEEDSGLLEVQDGEMKGTGDIETLESNHKEGRLE
ESLPAVDTSKVTSNDDSDPSPVVNTAKAVEEIKGEVEKTVECSMPVPKDDDLDVTQDV
NT seq
8817 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccacgcacattttaatgcacacttcagctacttcagccaccactgcctctgag
cagaatgcacaaaccactttttccataggccactttggcaaggagcagatccgcatcatc
gatgggccatctaaccactgtgtggctcatgcaaagctctctgggatgagggaagtagtc
caagggtctagcagccccagtccccacctttctgtttcaccagtcaacagcgaggaggat
gatggaggaggtgggcccagggtgaggaaaaaacggaaaaaaaaagacaagaaagacaca
agagaggacagagagtgcaacaatagaccaaagaaaaagaaggtacagaaagaagggaag
gggctgctcctgaagaaatcaaaagcactgaacgagctaaaagagacaaagaaggtggag
gggaaggtagtaaaggatcctaaaaaggtcaagaaagttcaagaggtcaagtcaaaaaca
cagggaaaggatgtgaccgccccaccaaggcagcgtgggaggaagccgaaagagcagagt
gttgtccccctggagaaaaggaaaaaagggaagcggaaaagtgatgcattgcaagaggcc
gctgagagtgatgatactgcctcactctgtacactggctacaggaggagaagaaagcaca
gaccctatggacaacactaagaggagatcaggtcgtcaggtgaagcgtaggaagtacaat
gaagatctagattttaaagttgtggatgatgatggtgagaccattgctgtgttaggagca
gagcgaattcccgctctctcctcctctaccctagcttggcaagcagaggaaccccctgaa
gatgaagccaacatcattgaaaagattctctctgtgcggactattaagaaggagacattc
catggagaaccagttgaagagtcagaagagttttatgtgaagtacagaaatttttcctac
cttcactgtaaatgggcaacattggaggagctggaaaaggaccctcgcattcaccaaaaa
atcaagcgcttcaggaacaaacacgcacagatgaagcacattttctcagagctggatgaa
gacctctttaatccagactatgttgaagtagatcgggttttggagattgcgatcaccaca
gacacagaaactggagaggaggtgacacactaccttgtaaagtggtgttctctgtcctat
gaggaaagcacttgggaactgcaggaggatgtagaccctgtgaagattcgtgagtttgag
gagctcaggaaaataccagaactcacgtctgttgaaaggccttcaccagagcaatggcag
aagcttgaacattctcgtgaatacagaaatggcaaccaactcagagaataccagctagaa
ggcatgaattggcttcttttcaattggtacaataggaaaaattgtatcctagctgatgaa
atgggccttggaaaaaccatccagtccataacattcctctatgagatcttccttatgggt
ttgagaggtcccttcctaatcatcgctcctctctcaaccattacaaactgggagagagag
ttccgcacatggacggagattaatgtaattgtttatcatggtagccagatcagccgccag
atgatcctgcagtacgagatgtatcacagagatgaacagggaaacataatgcctggcgtg
tttaagtttcatggtataattaccacatttgagatgatcatggctgattgccctgaactg
aaaaaggttaactggcgctgtgtggtgattgacgaagctcatcgactgaagaatcgtaac
tgtaaactgctggaaggactcaaactcatgaacttggagcataaagtactccttacaggt
acacctctacagaactctgtggaggaactcttcagtctgctcaacttcctggagccagtg
cagtttccctcagagagcactttccttgaggagttcggagatctaaaaacagaggagcag
gttaagaagcttcaagcaattttgaagcccatgatgttgaggcggctgaaggatgatgtg
gagaagaacttggcccccaaagaagaaaccatcattgaggtggaactcactaatatccag
aagaaatattaccgggccatcttggagaaaaactttacctttctggcaaagggagccaac
cagcataatatgccaaacctaatcaacactatgatggagctacgcaagtgctgcaaccat
ccatatctcatcacaggtgctgaagaaaagattctggatagctttaggaaaacccacaat
cctgatgcaccagatttccagctccaggctatgattcaggcggctggtaaattggtgctt
attgacaagctgctccccaaactcattgctgggggacataaagtgttggtgttctcccag
atggttcggtgcctagatatactagaggactacctcattcagagaaggtacacatatgag
cgtattgatgggagagtcagagggaatctgcgacaagcggctattgatagattttgtaag
gtggattcggaccgctttgtcttcctgctgtgcacaagagctggggggctgggaatcaac
ctcaccgctgcagatacttgcatcatattcgactctgactggaacccacagaacgaccta
caggctcaagctcgctgtcatcggattggccagagcaaagctgtgaaggtttatcgtctt
attacacgcaattcgtatgagagggagatgtttgacaaagccagtctaaagctgggactg
gacaaagctgttctacaggatatcaaccgcaaaggcagtttaaatggggtacagcagctg
tctaagatggaagtggaagatctcttgaggaaaggtgcatatggtgcccttatggacgag
gaagacgaaggctcaaagttctgtgaagaagatattgatcagattctgcaacgccgcact
cagaccatcaccattcagtctgaagggaagggatccacatttgctaaggccagctttgtt
tcctctggaaaccgaactgacatctctctggatgacccgaacttctggcagaaatgggca
aaaatcgctgagctggagattgactcaaaggaagagaaggagagtcttgtgattgataca
cctcgtgtgcggaaacaaacacgacactacaactcatttgaggatgatgagctgatggag
ttctcagagctagacagtgactcagaggagcgtccttgtcgttcacgacgccttggcgag
cgcaacaagcgatatcttcgagcagaatgcttcagagtggagaagaacctgcttatattc
gggtgggggcggtggaaggacatactgaatcatggacgttttaagtggcaccttacagaa
agagatgtggaagtcctgtgcagagcactgcttgcctactgtgtacgtcactacagaggt
gacgacaagatcaaaagcttcatctgggacttaatcacacccaccaaggatgggcacaat
caagcactccataaccactcaggactgtctgttcctgtaccccggggacgcaagggtaag
aaactaaagaaccagttaagtcctcctgagctaaagaatgctgactggctagtccactgt
aaccccgaagtagtactccaggatgacagctacaagaaacacctcaaacagcactgtaac
aaggtactgctgagggtgcggatgctgtattaccttaaagcagaggtactcggggaggct
gccaatcaggctctagaaggagtctcatccagtaaattagaggtggccctgccagaagtt
gactacatggaaatccctactggttggtgggatgcagaggcagataagtctctgcttatt
ggagtacacaaacatgggtatgagaggtacaatgccatgcgtgcagatcctcagctctgt
ttcttagagcgggtgggaatgccagatgtcatcgcacttacagcagagcagagtggtgct
gaggttgcccccgatgtacatgacagtgtaagtaagagcgatgatataaaagaagaagta
gatggtaagccagagggaatggaagacaaagaaaagcaaaagcagacaaactctttctca
gaggacacagagaaacatgacagttctcttggagtgactcgtccggacggattatctgag
gaggtagtggagcaaggtcaggcactatggccaacagcatctgctcttacagcaagatta
cgacgacttattactgcctatcagcgctacacacgccgtgaaccatttcgtcatgaaatt
cttgggcaagagggcattggtcctgttgcctggcaactgggtgaggagctacgacgctgt
atgacaaattctgatccacttttccttgagtggcaaagaaggtggacacgccgtgaacag
gctgatttctaccgtactgtgtcctcattcggggtggtatatgacccagagaagaaggtt
tttgactggcgccagttccgtatctttgctcgtttagagagaaaaacagatgaaagtttg
gagagatatttttggagctttgtgtctatgtgtcgtactgcctgcaggctgcccccaagg
aaagatgaaggtctggttgaccccactctatgtatagaacccattactgaagaacgagct
gctcgtacattgtaccgcattgagctcatgcgaaaggttcgtgagcaggtgttgaatcac
ccactcctagaggagcggctgaagctgtgtcgtcctagtctttacttgcctgtttggtgg
gaatgtggcaaacatgaccgtgatcttctcaacggtgtagccaagcatggccttagccgc
actgacttctacatattgaatgattcacatttgtctttcttggagacctaccgtaactac
gtccagaaagaaaaccatggcaacccagtgtcaagcttgccccctcaacactgctatctg
ggtcactgccattctcctcaacccacagagtatcatcataccctctttcactccacacaa
atacaccagcacatgcatgcacatggacaccaccaagcctcagaagtagcagcagcatcg
gaatcagaaagcactttaactatgcctgcaaactccagggaaagcttcttggattgcccc
acaattaatgactctttggatcttgggtctttacagcatgaaggcttggcctctggctcc
cttcatagcaaaactagcaaagagcccttcaatggatttccctttaattccacctcagct
ggtcagagtatgttaaattcatatgatgtacaagggacacaaggagacatgactgactct
atagatgggaaacttcgaaatgacgttcttgtgggagaacaggggtcttcagaggagact
gggttaatggccccttcagtggaactaaatgaacttcagaccccttggggaagctcagat
catgctgaaacaactgatattttcaatgaaggtgatcctattttgggggaaccttcactg
gaaacagaattcctggatcatgctcagtctgaagatggacaggaacgggaggatccactt
acaggctgtttaagcattcccagttctgactcacagagtgaccatgtagaaccactagca
ccaagcttcatgttgttcaaggatctaaatactggagagacttccatggaacagccagat
ttatctgccagtccacctgaatatgttgctccacaacctcttgcactttcagatgtaggt
attgaccaagcagggtccattggtgaagagctagaaacaaagctgtgtgattctgacatc
atacattgtaaccctagttcagaagatcgagcagaacatgtggaatatcagtttaagaaa
gaggaaacttccgaaggtggccatagtaatttggaaactgatcagaagctaaaggaaatt
gaaaacaaagcaaatagtgtgccctctttagaaactttgatggaaaatcacttggagccc
ctgaaggtagagtgtgacatgccaagtgaggatcacctgaaggatcattgtcaagtgtac
ttggaagaatcttgtgaaaaactcctaatggagccagataaagtgcccttaacagaacct
tttgatataccatgcaaagcaaccctggaggaactacttgaaggatcctcccatgatcca
agtgaaaaattgttggtaaaagaagcttctggaaaaccccttgaaaattctttagaacta
gtagagaatagtcctgccaacaccacaatctcctcccacactttgccttcttcatttcct
ttgtttaccacctttcccaccccagcaccagaccactgtgtgttcccagaccctgaggct
gaccatgacataaaacaggagttactcttgggttcaatagagtcagaggtcaaacccaaa
cccgacagcaccacactgaccccacacctggaacaggctgctgatatggaagtgaaggtt
gagatgaaggaaggggaaacaaagacaacagctttattgggagatagttttgttgaggca
acacagtttgatccatccatatgcgaggtggcaggcagtcttcatgatccaaaggagcca
accattgctcggctgctacaagagaaacctcattactcattctccgagtggcccaaggac
agagttatcatcaaccgcattgacagtatttgtcaagccatcttaaaggggaagtggcct
tcccctagtcatcagtatgaatctcccaactcagtcattaacacctgcatgtccaacagt
gcccagctaagagcagggtttttaccagcaagaatacctctacctcaagaccttaactta
aacattccacactcaataccacatatacacaaggaacggttagtaacacctgcatttctt
tctgaactcaagcgttctaagtgtcggtttgagtttaacacggaggttcctgttaaacca
atcgatcttggagaaaaaatccaacttggcatcccccaccatggtggtaccctcctccta
aatggttggcaagaagctgccatggatctgtctaacccagctgaaattgcatttagtagg
gaggctgaatctatgaggcatgtgacccatgctgttcaatcagcacctcacaagatgcct
aacctgagctccatggagggcttaatgggattggacatggcgggtattctgcaagcagga
cttgtacaccctgttacagggcagattgttaatggcagccttcgccgtgacgattcaata
atgaggaggaggagaggtcgaaggagaaatgtggaaacacttgaccttggattaatgaag
gaacaagacataaacttaactaaagggaaggggcagccagagaccgtcaaccaccccatt
gtgtcctccacctcctctcagcctgactgcctcacccatccaacttctgccccccctccc
tcagagtcattgaccatgagttttgacagagaggcagccagtaaaggcctgatggaatgg
ctcagacagaacccaagctacagaatggagcttcctgctttttcaatgtctcagactgca
agcatgttgcacagttttgctgaacgtccgaagcagaggagacatcgttgtaaagaccct
accaagttggatgtgaattccctgactggtgaggagagagtcccagtagtgcacaggaac
acaggtcgcaggctgggtggtgcaatggccccagccataaaggagctttctcaatggcta
gatgcaaacttagaatattttgtggctcctgactgggcagatgtggtgaagcattcaggt
ttcctcccagaaggaaagttcacccggattctcactgagccagtgaatcgagatactagc
acacgtcgtagaggcagaagacctcgcagtgagatgcccaaagctcctgagcttcctgct
ggcattggaccactctttatgaatgatgggcttattggcatggacttggttaacttaccc
aacctccgcaatgtccctggtattccgataagcgggctcatgggctttccacctggtttg
gctacatccctacagggagaagatactaagaatggcctgagtatgctacctatgatgctc
catagtatgtcaacagtgcaaccacccatgtatggcactcatttaagtggaatgataaac
cagtcactatctgctacagcctccacagtaaccacagctgccagctcctccagcacggca
acagtgacttccatatcctctgccactgtggccttaagccctagccctgcagtcagctcc
agcacagcaacttctaaagagagagccagccctgagcctagtactgagagacggagtatg
gatgagcgaacgttaggagagaatgagaaacaaatgttacctgctgttcccagtcccact
gttactagcagttctgctagcattacaagcagtgggagccatttgaccttcaacccattt
ttgatcccaggaatgcctcatggattactttatcctcatatgttcctgccacatggcagt
attatggcacttccatcagcatcagatagcactggcattactaagcagaagaaaaagaaa
attagggatgaaggaagggtggaagaagacagtggtttattggaggtacaggatggggag
atgaaggggacgggggatatagagacactggagagtaatcataaagagggcaggctggaa
gaatctttgccagctgtggacaccagtaaggtaacaagtaatgatgatagtgatccttca
cctgtggtcaacacagccaaagcagtagaggaaataaaaggagaggtagagaaaacagta
gagtgcagcatgcctgtgccaaaagatgatgacttggatgtaacgcaggatgtgtag
DBGET
integrated database retrieval system
