Ictalurus punctatus (channel catfish): 108273135
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Entry
108273135 CDS
T04658
Symbol
ddx17
Name
(RefSeq) probable ATP-dependent RNA helicase DDX17 isoform X1
KO
K13178
ATP-dependent RNA helicase DDX17 [EC:
5.6.2.7
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108273135 (ddx17)
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108273135 (ddx17)
Spliceosome [BR:
ipu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108273135 (ddx17)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
108273135
NCBI-ProteinID:
XP_017337659
Ensembl:
ENSIPUG00000015768
UniProt:
A0A2D0S4H2
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All DBs
Position
12:complement(10492085..10505990)
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AA seq
663 aa
AA seq
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MRGSSSYGDRDRDRGRDRGPRFGSSRGGPPPKKFGNPGERLRKKKWDLSELPKFEKNFYS
EHPEIQRMNQYEIEEFRRKKEITVRGSGCPKPVPNFHQAQFPQYVMDVLLQQNFKEPTAI
QAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELA
QQVQQVAYDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLR
RCTYLVLDEADRMLDMGFEPQIRKILDQIRPDRQTLMWSATWPKEVRQLAEDFLHDYIQI
NIGALELSANHNILQIVDVCMENEKENKLIQLMEEIMAEKENKTIIFVETKKRCDELTRR
MRRDGWPAMCIHGDKSQPERDWVLSEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPN
SSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVRVLEEARQAINPKLLQLVDSGRG
SGGGRMRYRNSSSNSNNPNLMYQDECDRRLRSGSGSSSKDSRGGGSYHREGRSSRDDRSS
SSSSYRDRSRDSRNSYSSGDQYQSYNSSGGGGYSSRAGGVSQSGGGSNGVSGGGQQNQSG
PPQGPFNQGPPPPPQSGPGPGPQPLMAQQFAPPPPPQPMMGFMGPGPYSFGPPPPPPPQQ
QRK
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgcgaggcagctcttcgtacggggacagagaccgagaccgtggacgggaccgagggccc
cgctttgggtccagtcgtggaggtcctcctcctaagaagtttgggaaccctggagaacga
ctgaggaagaagaaatgggaccttagcgagctgccaaagtttgagaaaaacttctacagc
gagcacccagagatccagcgcatgaatcagtatgagatcgaggagtttcgccgaaagaaa
gagatcactgtcaggggctctgggtgcccgaagccagtgccaaacttccaccaggcacag
tttcctcagtatgtgatggatgtactgctgcagcagaatttcaaggagcccacagccatc
caagcacaaggcttccccctggctctcagtggcagggacatggtgggcatcgcgcagacc
ggatctggcaaaacactcgcttatctgcttccggccattgtgcacatcaaccaccagccg
tacctggagagaggagatggacccatctgtctggttctggctccaacacgtgaactagca
caacaggtgcagcaggtggcgtatgactacggcaagtcttcccgaatcaagagcacctgt
gtgtatggaggagcccctaagggtccacaaatcagagacttggaaagaggtgttgagatt
tgcatcgccacccctggtcgtctgatcgacttcctggaggcagggaagaccaacctgcgc
cgatgcacctacctcgtgctggacgaggcagaccgcatgctggacatgggcttcgagcca
cagatccgcaaaattttagatcagatccggccggacagacagacactgatgtggagcgct
acctggcctaaggaggtgcgtcagctggcagaggacttcctccatgactacatccagatc
aacatcggggccctggagctcagcgccaaccacaacattctgcagatcgtggacgtctgc
atggagaacgaaaaggaaaacaagctgattcagctgatggaggaaatcatggcagagaag
gagaacaagaccatcatttttgtcgagacaaagaaacgctgtgatgagctgacgcgcagg
atgaggagagatggatggccagcaatgtgcattcatggtgacaaaagccagccagagaga
gactgggtcctttcagagttccgcagcggtaaagctcccatccttatcgctactgacgtc
gcctcacgtgggctggatgtggaagacgtgaagttcgtcattaactacgactacccgaac
tcttccgaggactatgtgcaccgtatcgggcgtactgcccgtagcaccaacaaaggcaca
gcttacacgttcttcacacccggaaacctgcggcaggcccgtgacctggtacgggttcta
gaggaggcccggcaggccatcaaccccaaacttctgcagctggtggactctggacgcggg
tcaggaggaggacgaatgcgttaccgtaactccagctccaactccaacaaccccaacctg
atgtaccaggatgagtgcgataggcgcctgcgctccggcagtggaagcagtagcaaggac
agccggggcggcggcagctaccaccgagaggggcgctcaagccgtgacgacagatcttcc
tcctcgtcttcgtaccgagatcgcagccgagatagccggaatagctacagctcaggcgat
cagtaccagagctacaacagcagcggagggggagggtacagctcaagggctggtggagtt
tcacagtcaggtggtggcagtaatggtgtgtcaggcggagggcagcagaaccaatccgga
ccaccacagggcccatttaatcagggtcctcctccaccaccacagtcagggcctggaccg
gggccacagcccctgatggcccagcagtttgccccacctccaccacctcagcccatgatg
ggatttatgggtccagggccatactcgttcggtccacctccgccaccccctcctcagcag
cagagaaagtaa
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