Ictalurus punctatus (channel catfish): 108273538
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Entry
108273538 CDS
T04658
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ipu03016
]
108273538
Enzymes [BR:
ipu01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
108273538
Transfer RNA biogenesis [BR:
ipu03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
108273538
Prokaryotic type
108273538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
108273538
NCBI-ProteinID:
XP_017338301
Ensembl:
ENSIPUG00000017559
UniProt:
A0A2D0S7A2
LinkDB
All DBs
Position
13:complement(15010511..15015499)
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AA seq
302 aa
AA seq
DB search
MAAVNNVSLTKLQSLNGIFSIYKKSGPTSADVLNTLKQMLLKEAGVDKPNPRKRKKQAIK
LGHGGTLDSAASGVLVVGIGEGTKMLTSMLAGSKKYIAVGELGKATDTFDATGSVVQEKS
HDHITREAFEEKLKQFTGEIMQVPPLYSALKKDGKRLSTLLKEGQEVEAKPARPVTVYSL
SLHDFNPPLFTLDVECGGGFYVRSLVDDLGKALSSCAHVRELTRTKQGQFTLQEHVLREE
RWTFQDISEVLQPCSKPAAVHNKSKKSKRQDAASQLGSERAAKDLHHSSPDNVGEDRKHS
SD
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagtaaacaatgttagtttaacaaagttacaatcgttaaatggcatattctcc
atatataagaaatcgggacccacttctgcagatgtgttaaacacgctgaaacaaatgctg
ttaaaagaggctggtgtagataaaccaaacccccggaaaaggaagaagcaggctatcaaa
ctgggccatggtgggactctggacagcgctgcttccggtgttctggtggttgggatcggt
gaagggacgaagatgctcacctccatgcttgctggatcaaagaaatacatagctgttgga
gagctgggcaaagcaaccgacacctttgatgccacaggaagtgttgttcaggagaaaagc
catgatcacataacaagagaggcttttgaagagaagctgaagcagttcactggtgaaatc
atgcaggtgccccctctgtactcggcactgaaaaaagatggcaagcgcctttctaccttg
ttgaaggaaggccaggaagtggaagctaagcctgcacgtccagttacagtttacagcctc
tcgttacacgactttaatcccccacttttcactttggatgttgagtgtggtggggggttt
tacgtcagaagcctggtggatgatctgggaaaagcgctgtcctcgtgtgctcatgtgcgg
gagctgacccggacaaagcagggccagttcactctacaagaacatgtgttaagggaggag
cgctggaccttccaggacatttctgaggtattacaaccctgctcaaagcctgcagctgtg
cacaacaagagcaaaaaaagcaaaaggcaggatgcggcctcccagcttggctctgaacgt
gctgctaaagatctccatcacagcagccctgataatgttggtgaagaccgtaaacacagc
agtgattaa
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