Ictalurus punctatus (channel catfish): 108277385
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Entry
108277385 CDS
T04658
Name
(RefSeq) DNA-directed DNA/RNA polymerase mu
KO
K03513
DNA polymerase mu [EC:
2.7.7.7
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
108277385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108277385
Enzymes [BR:
ipu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
108277385
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
108277385
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_thumb
DNA_pol_lambd_f
HHH_8
DNA_pol_B_palm
BRCT
NTP_transf_2
Jnk-SapK_ap_N
Motif
Other DBs
NCBI-GeneID:
108277385
NCBI-ProteinID:
XP_017345557
Ensembl:
ENSIPUG00000016367
UniProt:
W5UBD8
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All DBs
Position
16:5622170..5628830
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AA seq
508 aa
AA seq
DB search
MVPLKRRKVTTEQTASHDSEVCKFPDISIFIVERKMGASRKSFLTRLGRSKGFLIEESYS
SSTTHVVSENNTGDEVDIWIKKQEMEGKVSANSVNLLDISWLTESMASGNPVPIQDWHRL
KTSPKPSEVTPAVVMKSYACQRRTPLKHHNSFLTEALETLAENAEFSENEGRSVAFRRSA
SVLKALPYVVRAMNELKDLPCLGEHSLRVIKEILEDGTSSEVESTRQSEQFQAMKALTGV
FGVGARTADRWFREGLRSPEDLIHTGQKLNHAQQAGVQYYNDLNTPVTKKEAMVISDIVE
KAVKAVLPGAIITLTGGFRRGKEVGHDVDFLITHPEEGAEEKLMPKIVNWLEDQGLLLYQ
KTTRNSYLESKDGPARPPSNMDRFERCFSIFKLEQSQVNSDTRLEASSYNSGTTDGMEER
HSGSSWRAVRVDLVVSPYSQFAFATLGWTGSKLFERELRRWAGQEKGMSLSSHALYDSKQ
QRYLRANSEEDIFAHLGLEYIPPSERNA
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggttcccctaaaacgcaggaaagtgactacagagcaaactgcaagtcatgacagtgaa
gtgtgtaaatttcctgatatttctatattcatcgtggaaaggaagatgggtgcgtccaga
aaatcattcctgacacgtcttggaaggagtaaaggatttctgattgaagagtcttacagc
tcctccaccacacacgtggtgtcagaaaacaacactggggatgaggttgacatttggatt
aagaaacaggaaatggaaggaaaagtctcagccaactccgtcaacctgttggacatcagt
tggttgaccgagagcatggcaagcggaaatcccgtccccattcaagactggcacaggtta
aagaccagcccgaagccctctgaggtcactcctgcagttgtaatgaagagttatgcctgt
cagaggagaactccactgaagcaccacaactcattccttacagaagctctggagacctta
gccgagaatgcagagttcagtgagaatgaaggcaggagcgtagccttccgaaggtcggcg
tctgtcttgaaggcacttccttatgttgtgcgtgcgatgaacgagttgaaagacttgccc
tgcttgggtgagcattcactgagagttataaaggagatattagaagatggcacatcaagt
gaagtggagtcaacaagacagtctgagcagtttcaagccatgaaggcactgactggtgtt
tttggtgtgggagcaaggactgcagatcggtggtttagggaaggcctacgcagcccagag
gacctcatacacacaggacaaaagctaaaccatgcgcaacaagcaggagtgcagtattat
aacgatctgaacacacctgtcactaaaaaggaggctatggtcatcagcgacattgtagag
aaggcagtgaaagctgtgctgcctggggcaattattacactcacaggaggattccgaagg
ggtaaggaggtgggtcatgatgtggacttcctcatcacacacccagaggaaggggcagag
gaaaaattgatgcccaaaattgtgaattggttggaggatcagggtttgctgttgtaccag
aaaacaactaggaattcttacctagaaagtaaagatggacctgctcgtcctcccagtaac
atggaccgatttgagagatgcttctctatattcaagcttgaacaatctcaagtgaacagt
gatacacgtctggaagcttcttcatataactccggcacgacagacggaatggaggagcgt
cactcagggtcttcatggagagctgttcgagtcgatcttgtagtcagtccttacagtcag
tttgcttttgctacacttggctggacaggatccaagctctttgagagggaactgaggcgc
tgggcaggtcaggagaaggggatgtctttaagtagtcatgcactctacgacagcaaacaa
cagcgttatcttcgcgcaaactcagaagaggacattttcgcccatttgggcctggagtac
attccaccttcggagaggaacgcatga
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