KEGG   Ictalurus punctatus (channel catfish): 108277694
Entry
108277694         CDS       T04658                                 
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
  KO
K06237  collagen type IV alpha
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu04510  Focal adhesion
ipu04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    108277694 (col4a3)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    108277694 (col4a3)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ipu04147]
    108277694 (col4a3)
   00536 Glycosaminoglycan binding proteins [BR:ipu00536]
    108277694 (col4a3)
Exosome [BR:ipu04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   108277694 (col4a3)
Glycosaminoglycan binding proteins [BR:ipu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   108277694 (col4a3)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 108277694
NCBI-ProteinID: XP_017346004
Ensembl: ENSIPUG00000001563
UniProt: A0A2D0STI7
LinkDB
Position
17:complement(3700539..3744338)
AA seq 1656 aa
MRATPVGILFLGFVTLAHTEECGVNRKPECDCSVVKGEKGEQGFPGLIGSQGEDGFSGDE
GQPGPPGFMGDPGIPGFPGPKGSRGLPGKPGSWGPAGIPGLPGDEGPQGPPGSPGCNGTK
GERGSPGLPGLPGSVGLQGENGPPGPKGDTDSFPYPEDVIGEKGLPGRDGPKGEPGQPGD
CGPMGPMGRVGLEGKRGYPGIPGEKGVEGPRMIGPRGAKGVRGFPGIPGERGIKLFHEVH
RELKGEPGDPGHRGSPGIAGDRGLCGPKGEKGCTGDPGPLGEDGANGLEGEYGLNGSPGD
KGYRGPPGIPGLKGEKGDCGCSGPPGDCLPRNTLEKGQRGHKGFPGPPGLTGFQGVSGFP
GKTGVPGLGTPGKSGDRGPPGLSGIKGEKGESASQTVGPIGRDGARGQPGPYGDPGPEGL
LEICNGPPGLRGNKGMQGPVGETGEHGEQGEKGDLCRLCPYSGPTRAHSGPPGIRGPTGK
PGANGISGNKGSMGIKGQEGAPGNPGLVGAPGIQGKQGPKGDPGFVGPGAIGDQGDPGSQ
GLPGKSGQNGIPGRPGFQGPRGDKGNPGPFGAKGNKGESGSKGLPGFLGEMGVQGCPGVG
ATGEAGDKGSFGVRGLPGDPGDPGEKGDPGLVIITPGDPGKCGTKGLKGPPGEPGCLGPK
GLCGQPGPCGIKGENGLSQPGLQGPPGCKGEKGIQGHQGPPGIGEPGCPGPTGQCGIPGL
KGNSGYGNPGPTGRRGPPGEDGTIGPIGESGCNGIAGVFGQAGRAGCPGPRGDTGYDGPP
GVTGPAGVCTSGWPGATGVQGQKGMPGSTGCRGQTGMQGESGYQGQGLPGSAGTFGAPGL
NGQSGPPGLAGTKGLKGNNGMPGCTGPRGNDGPAGEPGCPGPSGSPGCPGPPGSKGMAGS
DGLPGCRGPRGQKGNRGDPGPKGEPQTVYNPGDPGDPGCIGPSGLTGLKGDSGIKGPTGR
CGQHGSQGSPGAPGPPGERGLDGLPGEPGVDGCVGEVGLSGSPGPKGAKGTPGQNGTPGD
PGTPGVNGPKGDKGEPSSPGPGEQGYPGEKGEPGIQGLNGKKGERGCIGPVGIPGSEGIR
GVVGETGLPGQPGSPGFPGEKGLDGQPGPLGRPGPVGPPGCSGSPGDPGPQGLKGNQGSD
GIPGLAGEKGNAGAPGYGPPGPAGVRGKPGCKGEPGAMGETGPPGKCGAVGDPGPCGEPG
PPGPLGNPGAQGLCVDGPKGERGPPGQPGSQGPRGICGPPGQPGLGFKGDKGNTGTSGPR
GVCGCPGDTGPQGIPGYAGSDGYPGPKGETGQKGDTGSRGQRGRDGSHGQPGNQGEKGPK
GPPGVPGADDYYRIMHIPGDRGLPGPPGKTGPPGVTGSPGLKGAIGAPGPKGLPGQDGFP
GLQGLRGQKGSRGLAGLPGDLGFTGEDGQKGSRGLPGPCLTNSARDSFLFTKHSQTQDIP
YCPSGSSKVYSGYSLLFINANKRGHGQDLGTMGSCLQMFSTMPFLFCNSDNVCRYASRND
YSYWLSTGTPMPSDLPSISGDTLAQYVSRCSVCDAPGNVIAFHSQNNTVPSCPIGWRSLW
QGYSYVMQSGVGSEGSGQPLSSPGSCLENFQRIPFIECLGRGTCNYYSDAYSYWLAALDP
SQMFSKPSPRIVKEDYPSIISRCQVCMKEPSCNQSS
NT seq 4971 nt   +upstreamnt  +downstreamnt
atgcgcgcgacaccagtgggaatattgttcctcggatttgtgacgctcgcgcacaccgag
gaatgtggcgttaacaggaagcccgagtgcgactgcagtgtagtcaaaggagaaaagggt
gagcaaggctttccaggtctgattggatcacaaggggaagatggattttcaggagatgaa
ggccaacctggacccccgggcttcatgggtgacccaggaataccaggttttccaggaccg
aaaggctcacggggactccctgggaagccaggatcctggggtcctgcaggaatacctgga
ctcccaggagatgaaggccctcaaggacctcctggtagcccgggatgcaatggcacaaag
ggtgaacgtggttcacctggattgccaggacttccaggatctgtcggcttacagggtgaa
aatggtccccctggccctaagggagacacagactccttcccatatcctgaagatgtgatt
ggagaaaaaggtttgccaggtagagatgggccaaagggtgagcctggacaaccaggtgac
tgtggaccaatgggaccaatgggacgtgtgggacttgaaggcaaaagaggataccctggc
attccaggagaaaagggtgtagagggacccagaatgattggcccccgaggtgcaaaaggc
gtgagaggttttcctggcatacctggtgagaggggtatcaaactatttcacgaagtacac
agagagctcaaaggagaaccaggggatccgggacacagaggcagccctggaattgcaggc
gatcgaggactttgtggccctaaaggagagaaaggatgcacaggagatccaggacctctg
ggggaagatggggcaaacgggctggagggagagtacggtctgaacggctctcctggtgac
aagggatatagggggcctcctgggatccctggtttaaagggggagaaaggtgactgtggt
tgctctggtcctccgggagactgtcttccacgcaatacactcgagaaaggccaacgagga
cataagggcttccctggacctcctggccttacagggtttcaaggtgtaagtggctttcct
ggaaaaacgggcgttccaggactaggtacacctggaaagtctggggatcgtggtccccca
ggcttaagtggaattaagggtgaaaagggagaatcagcatctcaaacagtaggaccaata
ggacgtgatggagctcggggacaacctggaccttatggtgaccctggtcctgaaggacta
ttagaaatatgtaacggcccaccggggttgagaggaaataaaggcatgcaagggcctgtg
ggtgaaactggagaacatggggaacaaggtgagaaaggagacctctgcagactgtgccct
tattcaggccctacacgtgcacattcagggccacctggtatacgtggtccaactggaaag
ccaggtgctaatggaatatctggcaacaaaggatcaatgggtattaaagggcaggaaggt
gcacctggcaatccgggtttggttggtgctccgggcattcaagggaaacagggaccaaaa
ggagaccctggctttgtaggacctggggctattggggaccaaggtgatccaggatctcag
gggctcccagggaagagtggacagaatgggataccgggaagaccaggatttcaaggccca
aggggagacaagggaaatccgggtccttttggggctaaaggcaataagggcgagtctgga
tcaaagggattaccaggattccttggtgaaatgggagtccagggctgccctggggttgga
gcaacaggggaagctggtgacaagggcagctttggtgtacgtggcctgccaggggatcct
ggagatccaggtgagaaaggtgaccctggtttggtgatcataacacctggagatccaggg
aagtgtggaacaaagggtcttaaaggtccacctggggaaccagggtgtcttggacccaaa
gggttatgtgggcaaccaggaccttgtggtataaaaggcgaaaatggattgtcacaaccg
ggtttacaaggaccacctggttgtaaaggtgaaaaaggcattcaaggtcatcaaggtcca
cctggcattggagaacctggttgtccaggacccacaggacaatgtggaataccagggtta
aagggcaatagtggttatggaaatccagggcccactggcaggcgagggcctccaggggag
gatgggacaattgggcctattggtgaatcgggttgtaatggaatcgctggagtttttgga
caggcagggagagctgggtgcccagggcctaggggtgacacaggatatgatggacctcca
ggggtgactggtccagcaggagtctgtacttctgggtggccaggtgcaacaggagtccaa
ggtcagaaaggaatgcctggaagtacaggatgtcggggtcagacaggtatgcagggtgag
tccggatatcaggggcaaggtttacctggttctgctgggacatttggggcacctggttta
aatggacaatctggtccacctggtctagccggaacaaagggtttgaaggggaataatggc
atgcctggttgcacaggcccacgggggaacgacgggcctgccggcgaacctggatgtcct
ggaccttctggaagccctggatgtcctggaccacctgggtctaaaggtatggctggcagt
gatggcctaccaggttgcagaggtccacgaggccagaaagggaatcggggggatccaggt
cctaaaggagaaccgcaaactgtctacaatcctggcgacccaggagaccccggatgcata
ggtccttctggtctgactgggcttaaaggggacagtggaatcaagggcccaactggcaga
tgtgggcaacatggatcacaaggcagccctggtgcaccgggtcctcctggagaacgaggc
ctggatggcttaccaggtgagcctggtgtcgatggctgtgttggagaagttggactttcg
ggttccccaggtcccaaaggtgccaaggggacacctggtcaaaatggaacaccaggagac
cctggtactccaggcgtaaatggcccaaaaggggacaaaggtgaaccaagttctcctgga
ccaggagagcaaggataccctggagagaagggtgagccaggcatacaaggccttaatgga
aagaaaggagaaagaggatgcattggccctgttggtattccaggatcagaagggattcgc
ggcgtggttggcgagacaggactaccaggacaaccaggatccccaggatttcctggagaa
aaaggtttagatggacagccaggccccctaggtcgtccgggaccagtaggcccaccaggt
tgttctgggtcaccgggcgatccgggtcctcaaggtcttaaaggaaaccagggcagtgac
ggcattcccggattagctggagaaaaagggaatgcaggagctcctggatatggacctcca
gggccagctggtgtcagaggtaaaccaggttgtaaaggggaaccaggagccatgggggaa
actgggcctccaggaaaatgtggtgcagtaggagacccagggccctgtggtgaaccaggg
ccgccaggaccccttgggaatcctggtgcgcagggtttgtgcgtggatggccccaaggga
gagcgaggacctcctggacaaccaggatcacaagggcccagagggatatgtggtccccca
ggacaacctggtctaggctttaagggagataagggcaacactgggacttctggaccacgt
ggagtgtgtggttgcccaggagacactggtccacaagggattccaggttatgctgggagc
gatggttaccctggtcccaaaggagaaacaggacaaaagggtgacactggatctcgaggt
caaagaggaagggatggctcacatggccaaccaggaaatcaaggagaaaaagggccaaaa
ggaccaccaggtgtaccaggggcggatgattactacagaatcatgcatattcccggagac
cgtggtctgcctggacctccaggaaagactggacctcctggagtaaccggttcaccagga
cttaaaggggcaataggagcccctggccctaaaggacttcctggccaagatgggttccct
ggtcttcaaggtttacgtggacagaaagggagcagaggattagcagggttgccaggagat
ttgggttttactggtgaagatggtcagaagggttccaggggtctaccgggaccctgcttg
accaacagtgcccgagatagcttcctgttcaccaagcacagtcagacacaagacatccct
tattgccctagtggatccagtaaagtctactctgggtactcactcctttttatcaacgcc
aacaaacggggacacggccaagatcttggcactatggggagctgtctacagatgttctcc
accatgccattccttttctgtaatagcgataatgtctgtcgctatgcctcccgaaacgac
tactcctattggctgtccactggcacacccatgcccagtgacctgccctcaatctcaggt
gataccctggcgcagtatgttagcaggtgctcagtatgtgacgctccaggtaatgtgata
gcgtttcacagccagaacaatacagtcccatcatgccccattggatggcggtctctgtgg
caaggctactcttatgtcatgcaatcaggtgtgggttccgagggctcgggtcagcccctg
tcgtctcctggatcctgtctggagaatttccagaggattccctttatcgagtgtcttggc
cgtggtacttgtaactactactcagatgcctacagctactggctggccgctctggatcct
agccagatgttcagtaaaccatccccgcggatagtaaaagaggactacccgagcatcatc
agtcgctgtcaggtgtgcatgaaggagccgtcttgtaatcagtcatcctga

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