Isoptericola variabilis: Isova_2011
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Entry
Isova_2011 CDS
T01520
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
iva
Isoptericola variabilis
Pathway
iva03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
iva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Isova_2011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
iva03400
]
Isova_2011
Enzymes [BR:
iva01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Isova_2011
DNA repair and recombination proteins [BR:
iva03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Isova_2011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AEG44747
UniProt:
F6FPL5
LinkDB
All DBs
Position
2172096..2174657
Genome browser
AA seq
853 aa
AA seq
DB search
MARSSASGGTTKQTVSVEGHRLQLTNLDKVLYPATGTTKGEVLHYLAEIAPVLIPHAANR
PATRKRWPDGVDGQVFFQKNADKSTPSWVRTRRIEHKTSANDYVLVNDLATLTWLGQTAT
LEVHVPQWQFGRTGVRHNPDRLVLDLDPGPGAGLPECAQVARWARAILVGMGLEPMPVTS
GSKGIHLYAALDGKQDSEQVSAVAKELARYLESEHPDLVVSDMKKSLRGGKVLVDWSQNN
GNKTTIAPYSLRGRDHPTVAAPRTWDELDDPDLRHLEYPEVLERVARDGDLLADLTQGHL
AALEPTPEHMARFERLEVYRSKRDPDKTPEPFGPSSPAADAPPGDTRPTFVIQEHHARRL
HWDFRLEHDGVLVSWALPKGEPTDPAKNHLAVQTEDHPLEYGSFEGTIPAGEYGAGEVTI
WDAGTYDLEKWVDGKEVIVTLHSERRGSRRLALIQTGGRDGDENSWLIHRTKEQPGGAGP
AEEPATGRDGPGRRPRSGTARRAPVELPDRPMLATAATQRELRGLDAAEWAFEMKWDGFR
TLATVTMPDDGTRGGEPSVRLTSRTGLDMTKTYPELQALAGMLSPDDLPAVLDGEIVALD
ARGRPEFRRLQQRANLQKKGDVEAARRRVKVDLMLFDVLALAGETLTDRTYDERRRLLER
TVRPARPVHVPPAFDGDLEAATDTSRELRLEGILAKRRSSRYAPGRRSREWLKLKHSRMQ
EVVVVGWRPLHAGEAREDDRTMGSLLLALPAPQHGDGALRYVGKVGTGFREKERTQIATR
LRGIERATPPVDGVPRAEARHARWVTPRLVGEVEYGDWTADPTDPDLVDEARLRHATWRG
WREDKAPADVRPE
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggcacggtcctccgcctcgggcggcacgacgaagcagacggtgtccgtcgagggccac
cgtctccagctgaccaacctcgacaaggtcctctaccccgccaccggcacgaccaagggc
gaggtcctgcactacctcgccgagatcgcgcccgtgctcatcccccacgcggcgaaccgg
cccgcgacgcgcaagcgctggcccgacggcgtcgacggccaggtgttcttccagaagaac
gcggacaagtcgaccccgtcgtgggtccgcacgcgccgcatcgagcacaagaccagcgcc
aacgactacgtgctcgtcaacgacctcgccacgctgacctggctcggccagaccgcgacg
ctcgaggtccacgtgccgcagtggcagttcggccgcaccggcgtgcggcacaaccccgac
cggctcgtgctcgacctcgaccccggcccgggcgccggcctgcccgagtgcgcgcaggtc
gcacggtgggcgcgcgcgatcctcgtcggcatggggctcgagccgatgcccgtgacgagc
ggctccaagggcatccacctgtacgcggcgctcgacggcaagcaggactccgagcaggtc
tccgccgtcgccaaggagctcgcgcgctacctcgagtccgagcaccccgacctcgtcgtg
agcgacatgaagaagtcgctgcgcggcggcaaggtgctcgtcgactggtcgcagaacaac
ggcaacaagacgacgatcgcgccctactcgctgcgcgggcgcgaccacccgaccgtcgcg
gcgccgcgcacgtgggacgagctcgacgacccggacctgcgccacctcgagtaccccgag
gtgctcgagcgcgtcgcgcgcgacggcgacctgctggccgacctcacccaggggcacctc
gcggcgctcgagcccacgcccgagcacatggcgaggttcgagcgcctcgaggtctaccgc
tccaagcgcgacccggacaagacccccgagccgttcggcccgtcgtcgcccgcggcggac
gccccgccgggcgacacgagaccgacgttcgtcatccaggagcaccacgcccgtcggctg
cactgggacttccgcctcgagcacgacggcgtcctcgtcagctgggcgctgcccaagggc
gagccgacggatccggcgaagaaccacctcgccgtccagaccgaggaccacccgctcgag
tacgggtcgttcgagggcacgatcccggccggagagtacggcgccggcgaggtgacgatc
tgggacgccggcacgtacgacctcgagaagtgggtcgacggcaaggaggtcatcgtcacg
ctgcactccgagcgccgcgggtcgcggcggctcgcgctcatccagaccggagggcgggac
ggcgacgagaacagctggctcatccaccgcaccaaggagcagccgggcggcgccggtccg
gccgaggagccggcgaccgggcgtgacggcccgggccgccggccgaggtcgggcaccgcg
cggcgcgcacccgtcgagctgcccgaccggcccatgctcgcgaccgccgccacgcagcgc
gagctgcgcggcctcgacgcggccgagtgggcgttcgagatgaagtgggacggcttccgc
acgctcgcgaccgtgacgatgcccgacgacgggacccggggcggcgagccgagcgtgcgg
ctcacgagccgcaccggcctggacatgaccaagacctaccccgagctgcaggcgctcgcc
gggatgctgtcgccggacgacctgcccgccgtgctcgacggcgagatcgtcgcgctcgac
gcgcggggccgccccgagttccgccgcctgcagcagcgcgccaacctgcagaagaagggc
gacgtcgaggccgcgcggcgccgcgtgaaggtcgatctcatgctgttcgacgtcctggcg
ctcgcgggcgagacgctcacggaccgcacgtacgacgagcgtcgccgcctgctcgagcgg
accgtgcgcccggcgcggcccgtgcacgtgccgcccgcgttcgacggcgacctcgaggcc
gccaccgacacctcgcgcgaactgcggctcgagggcatcctcgccaagcgccggtcgtcg
cggtacgcgcccgggcggcggtcgcgcgagtggctcaagctcaagcactcgcgcatgcag
gaggtcgtcgtcgtgggctggcggccgctgcacgcgggcgaggcgcgggaggacgaccgg
acgatgggctcgctcctgctcgcgctgcccgcaccgcagcacggcgacggcgcgctgcgc
tacgtcggcaaggtcggcaccggcttccgcgagaaggagcgcacccagatcgcgacccgg
ctgcgcgggatcgagcgcgcgacgccgccggtcgacggcgtcccgcgcgcggaggcgcgc
cacgcgcgctgggtcacgccgcgcctcgtgggcgaggtcgagtacggcgactggacggcc
gacccgaccgacccggacctcgtcgacgaggcccggctgcggcacgcgacgtggcgaggg
tggcgcgaggacaaggccccggcggacgtgcgccccgagtga
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