KEGG   Isoptericola variabilis: Isova_2011Help
Entry
Isova_2011        CDS       T01520                                 

Definition
(GenBank) DNA polymerase LigD, polymerase domain protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
iva  Isoptericola variabilis
Pathway
iva03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:iva00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Isova_2011
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:iva03400]
    Isova_2011
Enzymes [BR:iva01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Isova_2011
DNA repair and recombination proteins [BR:iva03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Isova_2011
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AEG44747
UniProt: F6FPL5
LinkDB All DBs
Position
2172096..2174657
Genome map
AA seq 853 aa AA seqDB search
MARSSASGGTTKQTVSVEGHRLQLTNLDKVLYPATGTTKGEVLHYLAEIAPVLIPHAANR
PATRKRWPDGVDGQVFFQKNADKSTPSWVRTRRIEHKTSANDYVLVNDLATLTWLGQTAT
LEVHVPQWQFGRTGVRHNPDRLVLDLDPGPGAGLPECAQVARWARAILVGMGLEPMPVTS
GSKGIHLYAALDGKQDSEQVSAVAKELARYLESEHPDLVVSDMKKSLRGGKVLVDWSQNN
GNKTTIAPYSLRGRDHPTVAAPRTWDELDDPDLRHLEYPEVLERVARDGDLLADLTQGHL
AALEPTPEHMARFERLEVYRSKRDPDKTPEPFGPSSPAADAPPGDTRPTFVIQEHHARRL
HWDFRLEHDGVLVSWALPKGEPTDPAKNHLAVQTEDHPLEYGSFEGTIPAGEYGAGEVTI
WDAGTYDLEKWVDGKEVIVTLHSERRGSRRLALIQTGGRDGDENSWLIHRTKEQPGGAGP
AEEPATGRDGPGRRPRSGTARRAPVELPDRPMLATAATQRELRGLDAAEWAFEMKWDGFR
TLATVTMPDDGTRGGEPSVRLTSRTGLDMTKTYPELQALAGMLSPDDLPAVLDGEIVALD
ARGRPEFRRLQQRANLQKKGDVEAARRRVKVDLMLFDVLALAGETLTDRTYDERRRLLER
TVRPARPVHVPPAFDGDLEAATDTSRELRLEGILAKRRSSRYAPGRRSREWLKLKHSRMQ
EVVVVGWRPLHAGEAREDDRTMGSLLLALPAPQHGDGALRYVGKVGTGFREKERTQIATR
LRGIERATPPVDGVPRAEARHARWVTPRLVGEVEYGDWTADPTDPDLVDEARLRHATWRG
WREDKAPADVRPE
NT seq 2562 nt NT seq  +upstreamnt  +downstreamnt
atggcacggtcctccgcctcgggcggcacgacgaagcagacggtgtccgtcgagggccac
cgtctccagctgaccaacctcgacaaggtcctctaccccgccaccggcacgaccaagggc
gaggtcctgcactacctcgccgagatcgcgcccgtgctcatcccccacgcggcgaaccgg
cccgcgacgcgcaagcgctggcccgacggcgtcgacggccaggtgttcttccagaagaac
gcggacaagtcgaccccgtcgtgggtccgcacgcgccgcatcgagcacaagaccagcgcc
aacgactacgtgctcgtcaacgacctcgccacgctgacctggctcggccagaccgcgacg
ctcgaggtccacgtgccgcagtggcagttcggccgcaccggcgtgcggcacaaccccgac
cggctcgtgctcgacctcgaccccggcccgggcgccggcctgcccgagtgcgcgcaggtc
gcacggtgggcgcgcgcgatcctcgtcggcatggggctcgagccgatgcccgtgacgagc
ggctccaagggcatccacctgtacgcggcgctcgacggcaagcaggactccgagcaggtc
tccgccgtcgccaaggagctcgcgcgctacctcgagtccgagcaccccgacctcgtcgtg
agcgacatgaagaagtcgctgcgcggcggcaaggtgctcgtcgactggtcgcagaacaac
ggcaacaagacgacgatcgcgccctactcgctgcgcgggcgcgaccacccgaccgtcgcg
gcgccgcgcacgtgggacgagctcgacgacccggacctgcgccacctcgagtaccccgag
gtgctcgagcgcgtcgcgcgcgacggcgacctgctggccgacctcacccaggggcacctc
gcggcgctcgagcccacgcccgagcacatggcgaggttcgagcgcctcgaggtctaccgc
tccaagcgcgacccggacaagacccccgagccgttcggcccgtcgtcgcccgcggcggac
gccccgccgggcgacacgagaccgacgttcgtcatccaggagcaccacgcccgtcggctg
cactgggacttccgcctcgagcacgacggcgtcctcgtcagctgggcgctgcccaagggc
gagccgacggatccggcgaagaaccacctcgccgtccagaccgaggaccacccgctcgag
tacgggtcgttcgagggcacgatcccggccggagagtacggcgccggcgaggtgacgatc
tgggacgccggcacgtacgacctcgagaagtgggtcgacggcaaggaggtcatcgtcacg
ctgcactccgagcgccgcgggtcgcggcggctcgcgctcatccagaccggagggcgggac
ggcgacgagaacagctggctcatccaccgcaccaaggagcagccgggcggcgccggtccg
gccgaggagccggcgaccgggcgtgacggcccgggccgccggccgaggtcgggcaccgcg
cggcgcgcacccgtcgagctgcccgaccggcccatgctcgcgaccgccgccacgcagcgc
gagctgcgcggcctcgacgcggccgagtgggcgttcgagatgaagtgggacggcttccgc
acgctcgcgaccgtgacgatgcccgacgacgggacccggggcggcgagccgagcgtgcgg
ctcacgagccgcaccggcctggacatgaccaagacctaccccgagctgcaggcgctcgcc
gggatgctgtcgccggacgacctgcccgccgtgctcgacggcgagatcgtcgcgctcgac
gcgcggggccgccccgagttccgccgcctgcagcagcgcgccaacctgcagaagaagggc
gacgtcgaggccgcgcggcgccgcgtgaaggtcgatctcatgctgttcgacgtcctggcg
ctcgcgggcgagacgctcacggaccgcacgtacgacgagcgtcgccgcctgctcgagcgg
accgtgcgcccggcgcggcccgtgcacgtgccgcccgcgttcgacggcgacctcgaggcc
gccaccgacacctcgcgcgaactgcggctcgagggcatcctcgccaagcgccggtcgtcg
cggtacgcgcccgggcggcggtcgcgcgagtggctcaagctcaagcactcgcgcatgcag
gaggtcgtcgtcgtgggctggcggccgctgcacgcgggcgaggcgcgggaggacgaccgg
acgatgggctcgctcctgctcgcgctgcccgcaccgcagcacggcgacggcgcgctgcgc
tacgtcggcaaggtcggcaccggcttccgcgagaaggagcgcacccagatcgcgacccgg
ctgcgcgggatcgagcgcgcgacgccgccggtcgacggcgtcccgcgcgcggaggcgcgc
cacgcgcgctgggtcacgccgcgcctcgtgggcgaggtcgagtacggcgactggacggcc
gacccgaccgacccggacctcgtcgacgaggcccggctgcggcacgcgacgtggcgaggg
tggcgcgaggacaaggccccggcggacgtgcgccccgagtga

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