Janthinobacterium agaricidamnosum: GJA_1881
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Entry
GJA_1881 CDS
T03157
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
jag
Janthinobacterium agaricidamnosum
Pathway
jag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
jag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GJA_1881 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jag03400
]
GJA_1881 (recB)
Enzymes [BR:
jag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GJA_1881 (recB)
DNA repair and recombination proteins [BR:
jag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GJA_1881 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
DUF6825
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
CDG82517
UniProt:
W0V5I9
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All DBs
Position
2068103..2071765
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AA seq
1220 aa
AA seq
DB search
MSSQLLQPLSFPLHGSRLIEASAGTGKTWTIAALYVRLVLGHGGAQGFTRPLLPADILVM
TFTRAATRELSNRVRQRLVEAAAYFRGEASRGDDYLDALLESYPDYSERQKAAHRLMLAA
ETMDEAAIFTIDAWCQRMLREHAFDSGSLFDEELVSDEQALFEDAAHDYWRQQVYPLNAV
ALEALLACWNDVGVLKKTIRELARRAASLDTGADEALGALIGRVQAEQQARLAQLKQGWL
ERADRMEQWIARQRELSPKCFNGTKMKPESLLKWFDGLRAWAGQPHLVRPDISDTAWRRL
TPDGIADAYARNFTAEVPDDFDATAALAAALAQIQPLAHALYRHAAGKIAARIEELKRRA
RQFGFADMLLRLQAALQGENGAALRQRIVDQYPLVMVDEFQDTAPGQYRIFDLLYRVAGN
DPALGLFLIGDPKQSIYGFRGADIQSYLAARRATAGRHYQLGTNYRSTEPLVAAVNQLFL
HAEGSEHFAGFTAGAFRYRNERENPLPFEAVRAKGRGDRLVTGDGPLPALSVTLASDENL
KGDGYRDYFAQHCAEHIVALLNDPLAGFDGQNGLVRLQPADIAVLVRDRREAAAIRRALQ
QRKVASVYLSDKDSVIDSEEAADVLRWLHALANPLDGALARAAFATRTIGLPLAALAALS
SNELEWEQRVEQLKGLHLVWQRQGVLAMLRRFIHELKLPSALLRQPGGERRLTNLLHLAE
LLQSASRQLDGEQALIRWLAEQIAGGGDGQGDSGERVLRLESDAELVKVVTVHKSKGLEY
PLVYLPFAVTARKAERRNRSFFEYTDGDGVRQIDMALSDDALEAVEAARIEEDLRLLYVA
LTRARHYLWLGVAALASRKAGDNVLHESALGYLLAGGEKLPAAELLPRWQRLRQVCGDIA
IAVAGQPEKMTPLKRLELRPALGDAALFGGRFERDWTVGSFTSLTRQIGAANAHVPQLAR
DETLLEDDDSTEAMRTDDAPWHRFPRGSVPGNFLHEQLEWMGQEGFAIIHDDTFDSRLAA
RCERAGWGHRQDDTIIWLRAVAETPLPLLGAALCEIASLLPEMEFWFPSERLNTAALDQL
CSAHLLGETPRPALPRRQLHGMLKGYADLVIERDGRYWVLDYKSNFLGTGDGAYHRQALA
NGMAQHRYDIQGAVYLLALHRLLRSRLGDSYDPQQHLGGALFLFLRGIANPHTHGCYWLA
PDTALLDGLDRLLDEPHHED
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccaattgctgcaaccgttgagttttccgctgcacggctcgcgcctgatcgaa
gcgagcgccggcaccggcaagacctggaccatcgccgcgctgtacgtgcggctggtgctg
ggccatggcggcgcgcagggttttacgcggccgctgctgccggccgacatcctggtgatg
accttcacccgcgccgccacgcgcgaactgtcgaaccgggtgcgccagcggctggtcgag
gcggcggcttatttccgcggcgaggccagtcgcggcgacgattacctcgatgcgctgctg
gaatcctaccctgactacagcgaacggcaaaaggcggcgcaccggctgatgctggccgcc
gaaaccatggacgaggcggcgatcttcaccatcgacgcgtggtgccagcgcatgttgcgc
gagcatgcgttcgacagcggcagcctgttcgacgaagaactggtcagcgacgaacaggcg
ctgttcgaggatgcggcccacgattactggcgccagcaagtctatcccttgaacgcggtc
gcgctggaagcgctgctggcgtgctggaacgatgtcggggtgctcaagaaaaccatccgc
gaactggcccggcgcgccgccagcctggacaccggtgccgatgaggcgctgggcgccttg
atcggccgggtgcaggccgagcagcaggcgcggctggcgcaactgaaacagggctggctg
gaacgggccgaccgcatggaacaatggatcgcccggcagcgcgagctgtcgccgaagtgt
tttaacggcaccaagatgaagccggaatcgttgctcaaatggttcgacggcttgcgggcc
tgggccggccagcctcacctggtcaggccggacatcagcgacaccgcgtggcgccggctg
acgccggacggcatcgccgacgcgtacgccaggaatttcacggccgaggtgccggacgat
ttcgacgcgaccgccgcgctggccgccgcgctggcgcagatccagccgctggcgcatgcg
ctgtaccggcacgcggccggcaagatcgccgcgcgcatcgaggaattaaaacgccgcgcg
cgccagttcgggttcgccgacatgctgctgcgcctgcaagccgcgctgcaaggcgaaaac
ggcgccgcgctgcgccagcgcatcgtcgaccagtatccgctggtcatggtcgatgaattc
caggataccgcgccgggccagtatcggattttcgacttgctgtaccgggtcgccggcaac
gatccggcgctgggcctgttcctgatcggcgacccgaaacagtcgatttacggctttcgc
ggcgccgacatccagagctacctggcggcgcgccgcgccaccgccggccggcattaccag
ctgggcaccaattaccgctcgaccgaaccgctggtggcggcggtcaaccagctgttcctg
cacgccgaaggttccgaacatttcgctggttttaccgccggcgccttccgctaccgcaat
gagcgggaaaatccgctgccgttcgaggccgtccgcgccaagggccgcggcgaccggctg
gtgactggcgacggcccgctgcccgccttgagcgtgacgctggccagcgatgaaaacctg
aagggcgacggctaccgcgattatttcgcgcagcactgcgccgaacatatcgtcgccttg
ctgaacgatccgctggccggttttgacggccagaacggcctggtacggctgcagccggcc
gatatcgcggtgctggtgcgcgaccgccgcgaagcggccgcgatccgccgcgcgctgcag
cagcgcaaggtcgccagcgtgtatttgtcggacaaggattcggtgatcgacagcgaagag
gcggccgacgtgctgcgctggctgcacgcgctggccaatccgctcgatggcgcgctggca
cgggccgcgttcgcgacgcgcaccatcggcttgccgctggccgcactggcggccttgtcg
agcaacgaactggaatgggaacagcgcgtcgaacaattgaagggcttgcacctggtctgg
cagcgccagggcgtgctggcgatgctgcgccgcttcatccatgaactgaaattgccgtcg
gcgctgctgcgacagccgggcggcgaacggcgcctgaccaatttgctgcacctggccgaa
ttgttgcaatcggccagccgccagctcgatggcgaacaggcgctgatacgctggctggcc
gagcagatagctggcggcggcgacggccagggcgacagcggcgaacgggtgctgcgcctt
gaaagcgacgccgaactggtcaaggtggtgacggtgcacaagtccaagggcctggagtat
ccgctggtgtatctgccgttcgcggtcaccgcgcgcaaggccgagcggcgcaaccgcagc
ttcttcgaatataccgacggcgacggcgtgcgccagatcgacatggccctgagcgacgac
gcgttggaagcggtcgaggcggcgcgcatcgaagaagatttgcggctgctgtacgtggcg
ctgacgcgcgcccgccactacctgtggctgggcgtggcggcgctggccagccgcaaggcc
ggcgacaatgtgctgcacgaatcggcgctcggctatttgctggccggcggcgaaaaattg
ccggccgccgaattgctgccgcgctggcagcgcttgcggcaagtgtgcggcgacatcgcc
atcgccgtggccggccagcccgaaaaaatgacgccgttgaagcgtcttgaattgcgtccg
gcgctgggcgatgcggcgttatttggcggacggttcgaacgcgactggacggtcggcagt
tttacctcgctgacgcggcagatcggcgccgccaatgcgcatgtgccgcaactggcgcgc
gatgaaaccctgctggaagacgacgacagcacagaggcgatgcgcaccgacgacgcgccg
tggcaccgttttccgcgcggctcggtgccgggcaacttcctgcatgagcaactggagtgg
atgggccaggaaggcttcgccatcatccacgacgacaccttcgacagccggctggccgcg
cgctgcgagcgggccggctggggccaccgccaggacgataccatcatctggctgcgcgcg
gtggccgaaacgccgctgccgctgctgggcgccgcgctgtgcgagatcgcatcgctgctg
ccggaaatggaattctggttccccagcgagcgcttgaataccgccgcgctggaccagctg
tgcagtgcgcatctgctgggcgaaacgccgcgtccggccttgccgcggcgccagctgcac
ggcatgctgaaagggtatgccgacctggtcatcgaacgcgacggccgctactgggtgctc
gactacaaatcgaatttcctcgggaccggcgatggcgcctaccatcggcaggcgctggcc
aacggcatggcgcagcaccgctacgatatccagggcgcggtctacctgctggcgctgcac
cgcttgctgcgcagccgcctgggcgacagctacgatccgcaacagcacctgggcggcgcg
ctgttcctgtttttgcgcggcatcgccaacccgcatacccacggctgttactggctggcg
ccggacaccgcgctgctcgacggcctggaccgattactcgatgagccccaccatgaagat
tga
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