KEGG   Janthinobacterium sp. 17J80-10: EKL02_17725
Entry
EKL02_17725       CDS       T05896                                 
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
jaj  Janthinobacterium sp. 17J80-10
Pathway
jaj02020  Two-component system
jaj02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:jaj00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    EKL02_17725
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    EKL02_17725
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:jaj03021]
    EKL02_17725
Transcription machinery [BR:jaj03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     EKL02_17725
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_38 HTH_IclR Xre-like-HTH HTH_23
Other DBs
NCBI-ProteinID: QAU35850
UniProt: A0A410UX22
LinkDB
Position
3957829..3959304
AA seq 491 aa
MKQSLQLRVSQHLALTPQLQQSIRLLQLSTLELQQELEHILADNPMLERVDDPLDHSVRL
LADGAINQTSSPAEKSAAEDAPAADGETAYEGAEGGEAADGGNGEADWSFDDVARTGKNP
EDDDSRPQLEAHHITLREHLLEQMRLTSHETRDRALMELIIDAIDNNGYLEEPLEEIHAR
LPAELEIDPEELAIALKLVQSFEPAGVGARDAGECLALQIRRMPKVPMVTRRMALTIVEK
HLGLFAQRDFNKLKKLLDCDDEDLREAQCIIRQCNPHPGAVFASDAADYVVPDVIVKRGK
NGWQVMLNHDVMPRLRVNALYANILKQNKGEGSLTSQLQEAKWLIKNMRQRFDTILRVSQ
AIVERQRNFFSHGAVAMRPLVLREIADTLGLHESTISRVTTQKYMLTPHGMFELKYFFGS
HVATEAGGEASSTAIRALIKQLIGAEDPKNPLSDSKIAEMLGEQGMVVARRTVAKYREAL
KIPPVNLRKSL
NT seq 1476 nt   +upstreamnt  +downstreamnt
atgaaacagtcacttcagctacgcgtatcgcagcatctggcattgacgccgcagttgcag
cagtcgatccggctgctgcaattgtcgacgctggaattgcagcaggaactggaacatatc
ctggctgacaatcccatgctcgagcgcgttgacgatccgctcgaccattcggtgcgcctg
cttgccgatggcgccatcaaccagaccagcagcccggcggaaaagtccgccgccgaagat
gcgccggcggccgatggcgaaactgcctatgaaggcgcagaaggcggcgaggcggcggat
ggcggcaatggcgaggccgactggagtttcgacgatgtcgcccgcaccggcaagaaccct
gaagacgacgactcacgtccgcaactggaagcgcaccacatcacgttgcgcgaacacctg
ctggaacagatgcgcctgaccagccatgagacgcgtgatcgcgccctgatggaattgatc
atcgacgccattgacaacaatggctacctggaagagccgctcgaggaaattcatgcgcgc
ttgcctgccgagctggaaatcgatccggaagaattggccatcgccctgaaactggtgcaa
agtttcgagccggccggcgtcggcgcgcgcgacgccggtgaatgcctcgcactgcaaatc
cggcgcatgccgaaagtgccgatggtgacacgacgcatggcgctgaccatcgtcgaaaag
cacctcggcctgtttgcgcagcgcgacttcaacaagctcaagaaactgctcgattgcgat
gacgaggatttgcgcgaagcacagtgcatcatccgccagtgcaacccccatcccggggct
gtctttgccagcgatgccgccgactatgtcgtgccggacgtaatcgtcaagcgcggcaag
aacggctggcaagtcatgctcaatcatgatgtgatgccccggcttcgcgtgaatgccttg
tacgcgaatatcctcaagcaaaacaagggtgagggctcactcacttcgcaattgcaggaa
gcaaaatggctcatcaagaacatgcgccagcgcttcgacacgatcctgcgggtttctcaa
gccattgtggagcgacaacgcaatttcttttcgcatggcgccgtcgccatgcgccctctt
gtcttgcgcgaaatagctgatacactaggtttacacgagagtactatttctcgtgtaaca
acgcagaagtacatgctgacgccgcatggcatgtttgagctgaagtatttcttcggcagc
catgtcgccacagaagccggcggcgaagcttcatcaacggcgatacgggcgttgatcaaa
caattgataggagctgaagaccccaagaaccccctctctgacagcaagattgcagaaatg
ctgggggagcaaggcatggtcgttgcccggcgcactgtggccaagtaccgcgaagccttg
aaaatcccgccagtcaacctgcgcaagtccttgtag

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