Janthinobacterium sp. 17J80-10: EKL02_17725
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Entry
EKL02_17725 CDS
T05896
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
jaj
Janthinobacterium sp. 17J80-10
Pathway
jaj02020
Two-component system
jaj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
jaj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
EKL02_17725
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EKL02_17725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jaj03021
]
EKL02_17725
Transcription machinery [BR:
jaj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EKL02_17725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
Xre-like-HTH
HTH_23
Motif
Other DBs
NCBI-ProteinID:
QAU35850
UniProt:
A0A410UX22
LinkDB
All DBs
Position
3957829..3959304
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AA seq
491 aa
AA seq
DB search
MKQSLQLRVSQHLALTPQLQQSIRLLQLSTLELQQELEHILADNPMLERVDDPLDHSVRL
LADGAINQTSSPAEKSAAEDAPAADGETAYEGAEGGEAADGGNGEADWSFDDVARTGKNP
EDDDSRPQLEAHHITLREHLLEQMRLTSHETRDRALMELIIDAIDNNGYLEEPLEEIHAR
LPAELEIDPEELAIALKLVQSFEPAGVGARDAGECLALQIRRMPKVPMVTRRMALTIVEK
HLGLFAQRDFNKLKKLLDCDDEDLREAQCIIRQCNPHPGAVFASDAADYVVPDVIVKRGK
NGWQVMLNHDVMPRLRVNALYANILKQNKGEGSLTSQLQEAKWLIKNMRQRFDTILRVSQ
AIVERQRNFFSHGAVAMRPLVLREIADTLGLHESTISRVTTQKYMLTPHGMFELKYFFGS
HVATEAGGEASSTAIRALIKQLIGAEDPKNPLSDSKIAEMLGEQGMVVARRTVAKYREAL
KIPPVNLRKSL
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagtcacttcagctacgcgtatcgcagcatctggcattgacgccgcagttgcag
cagtcgatccggctgctgcaattgtcgacgctggaattgcagcaggaactggaacatatc
ctggctgacaatcccatgctcgagcgcgttgacgatccgctcgaccattcggtgcgcctg
cttgccgatggcgccatcaaccagaccagcagcccggcggaaaagtccgccgccgaagat
gcgccggcggccgatggcgaaactgcctatgaaggcgcagaaggcggcgaggcggcggat
ggcggcaatggcgaggccgactggagtttcgacgatgtcgcccgcaccggcaagaaccct
gaagacgacgactcacgtccgcaactggaagcgcaccacatcacgttgcgcgaacacctg
ctggaacagatgcgcctgaccagccatgagacgcgtgatcgcgccctgatggaattgatc
atcgacgccattgacaacaatggctacctggaagagccgctcgaggaaattcatgcgcgc
ttgcctgccgagctggaaatcgatccggaagaattggccatcgccctgaaactggtgcaa
agtttcgagccggccggcgtcggcgcgcgcgacgccggtgaatgcctcgcactgcaaatc
cggcgcatgccgaaagtgccgatggtgacacgacgcatggcgctgaccatcgtcgaaaag
cacctcggcctgtttgcgcagcgcgacttcaacaagctcaagaaactgctcgattgcgat
gacgaggatttgcgcgaagcacagtgcatcatccgccagtgcaacccccatcccggggct
gtctttgccagcgatgccgccgactatgtcgtgccggacgtaatcgtcaagcgcggcaag
aacggctggcaagtcatgctcaatcatgatgtgatgccccggcttcgcgtgaatgccttg
tacgcgaatatcctcaagcaaaacaagggtgagggctcactcacttcgcaattgcaggaa
gcaaaatggctcatcaagaacatgcgccagcgcttcgacacgatcctgcgggtttctcaa
gccattgtggagcgacaacgcaatttcttttcgcatggcgccgtcgccatgcgccctctt
gtcttgcgcgaaatagctgatacactaggtttacacgagagtactatttctcgtgtaaca
acgcagaagtacatgctgacgccgcatggcatgtttgagctgaagtatttcttcggcagc
catgtcgccacagaagccggcggcgaagcttcatcaacggcgatacgggcgttgatcaaa
caattgataggagctgaagaccccaagaaccccctctctgacagcaagattgcagaaatg
ctgggggagcaaggcatggtcgttgcccggcgcactgtggccaagtaccgcgaagccttg
aaaatcccgccagtcaacctgcgcaagtccttgtag
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