KEGG   Janthinobacterium sp. 1_2014MBL_MicDiv: YQ44_08770Help
Entry
YQ44_08770        CDS       T04539                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
jaz  Janthinobacterium sp. 1_2014MBL_MicDiv
Pathway
jaz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:jaz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    YQ44_08770 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:jaz03400]
    YQ44_08770 (ligD)
Enzymes [BR:jaz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     YQ44_08770 (ligD)
DNA repair and recombination proteins [BR:jaz03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     YQ44_08770 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: APA67913
UniProt: A0A1I9XVX1
LinkDB All DBs
Position
1970467..1972974
Genome map
AA seq 835 aa AA seqDB search
MKAALKTYRSKRNFAVTPEPAGGDEEAGAALAFVIQKHWASRLHYDFRLELDGTMKSWAV
PKGPSYDTHDKRMAVQVEDHPVSYARFEGTIPAKQYGAGKVIIWDKGTWQPQAATPDARK
ALAAGELKFTLHGHKMHGNWVLVRMKGKGDQRSEKQPAWLLIKERDAYARPAVEFSVVDE
FPDSVRNKAMPRPRKAAAPPAAPLPATLAPQLATLADAPPPDAQDWIFELKFDGYRMLAR
CDGKHVDLITRNGNDWTAKLPALRQALEKLGLPPGWYDGEIVVNGVDGQSDFGALQRAFD
AAATSAIVYYLFDVPYFDGHDLRGQPVEARRALLEQLLGQLPASPLVRFSAALDAGPREL
LAHACKLGLEGVIGKRRGSPYAARRSGDWIKLKCGLRQEFVIGGYTAPQGAREGIGSLLL
GVYDAHGQLRYAGNVGSGFDDATLREVRRRLDALAVDASPFAGRAGGVRQPLWVRPQLVA
EVGFAQWTSAGAVRHAVFHGLRLDKKPADIVRERAQRIKKEAAMQEKQEKQEKQDIEPDG
MLPASFKVSHAGRVIDRDSGATKIDLVRYYALVSKLMLVHLRGRPVSLVRAPAGVGGELF
FQKHADASSMPGVKQLDARLDPAHAPMLEVATMQGLLSAAQWNVVEFHTQNALASAYDTP
NRLVFDLDPGKGVAWPAIREAAVLLHAFLTELGLPAFLKTSGGKGLHVVVPIRPKHDWDT
VKRFSQAIVEHMAQLIPQRFVVKSGPANRVGKIFIDYLRNGRGATTVCAWSARTRSGLGI
SVPLAWEELDALTAGDAWNVGNVHGRLDVGNAPWAGYARSAKGLDAAMKKLGVDA
NT seq 2508 nt NT seq  +upstreamnt  +downstreamnt
atgaaagccgccttgaagacctaccgctccaagcgcaacttcgccgtcacgccggaaccg
gccggcggcgatgaggaagcgggcgcggcgctcgctttcgtgatccagaagcactgggcc
agccgcttgcattacgatttccggctggaactggacggcaccatgaaaagctgggccgtg
ccgaaaggccccagctacgacacgcacgacaagcgcatggcggtgcaggtggaagaccat
cccgtttcgtacgcgcgctttgaaggcacgattcccgcaaaacagtatggcgctggcaag
gtcatcatatgggacaagggcacgtggcagccgcaagcggccacgccggacgcgcgcaag
gcgctggcggccggcgagctgaaattcaccctgcacggccacaagatgcatggtaactgg
gtgctcgtgcgcatgaagggcaagggcgaccagcgcagcgaaaagcagccggcctggctg
ctgatcaaggaaagagatgcatacgcgcggccggctgtcgaattttccgtcgtcgacgag
ttccccgacagcgtcaggaacaaggccatgcccaggccacggaaggccgccgctccgcct
gcggcgccgctgcccgccaccttggcgccgcagctcgccaccctggccgatgcgccgccg
cccgatgcgcaggactggatcttcgagctgaaattcgacggctaccgcatgctggcccgc
tgcgatggaaagcatgttgatttgatcacgcgcaacggcaatgactggacggccaaattg
ccggcattgcggcaggcgctggaaaagctgggcttgccgccgggctggtatgacggcgaa
atcgtcgtcaacggggtggatggccaatccgatttcggtgccctgcagcgcgctttcgac
gcggcagccaccagcgctatcgtgtattacctgttcgacgtgccgtacttcgacggccac
gacttgcgcggccagcccgtcgaggcgcgtcgcgcgctgctggagcagttgctcgggcaa
ttgccggcctcgcccctggtgcgcttcagcgcggcgctcgacgccgggccgcgggagttg
ctggcccatgcctgcaagctggggctcgagggcgtgatcggcaagcggcgcggctcgccg
tacgcggcgcgccgttccggcgactggatcaagctcaagtgcggactgcgccaggaattc
gtcatcggcggctatacggcgccgcagggtgcgcgcgaaggcatcggctcgctgttgctg
ggcgtgtacgacgcccacggccagttgcgctacgcgggcaatgtgggcagcggctttgac
gatgccactttgcgagaggtgcggcgccggctcgacgcgctggccgtcgatgccagcccg
ttcgcgggcagggcgggcggcgtgcgccagccgctgtgggtacggccgcaactggtggcc
gaggtcggttttgcgcaatggaccagcgctggcgccgttcgccatgccgtgtttcacggt
ttgcgcctggacaagaagccggccgacatcgtgcgcgagcgggcgcagcggatcaaaaag
gaggcggcgatgcaggagaaacaggagaaacaggagaaacaggatatcgaaccggacggc
atgctgccggccagcttcaaggtcagccatgccgggcgcgtgatcgacagggacagcggc
gccaccaagatcgacctggtgcgctattacgcgctggtcagcaagctgatgctcgtgcat
ttgcgcgggcggcccgtgtcgctggtgcgcgcgccggccggcgtcggcggcgagctgttt
ttccagaagcatgcggatgcgtccagcatgcccggcgtcaaacagctcgatgcgcggctg
gacccggcacatgcgcccatgctggaagtggcgaccatgcaaggcctattgtcggcggcg
caatggaatgtggtggaattccacacgcaaaacgcgctggccagcgcctacgacacgccg
aaccgcctggtgttcgacctcgacccgggcaagggcgtggcctggcccgccatccgggaa
gcggccgtgctgctgcacgccttcctgacggagctgggcttgcccgcgttcctgaagacc
agcggcggcaagggcttgcacgtggtcgtgccgatccggccgaaacacgattgggacacg
gtgaaacggttttcacaagcgatcgtcgaacacatggcgcagctgataccgcagcgcttc
gtcgtgaaaagcggtccggctaaccgcgtcggcaagattttcatcgattacctgcgcaat
gggcgcggcgccaccaccgtgtgcgcgtggtcggcccgcacgcgctcgggcctgggcatt
tccgtgccgctggcctgggaggaactcgatgcattaacagcgggcgacgcgtggaatgtc
ggtaacgtgcacggccgtctggacgtcggcaatgcgccgtgggccggctatgcgcgcagc
gcgaaaggcctcgacgcggccatgaaaaaactcggcgtcgacgcttga

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