KEGG   Jatropha curcas: 105628016Help
Entry
105628016         CDS       T03922                                 

Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
jcu  Jatropha curcas
Pathway
jcu03030  DNA replication
jcu03410  Base excision repair
jcu03420  Nucleotide excision repair
jcu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:jcu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    105628016
   03410 Base excision repair
    105628016
   03420 Nucleotide excision repair
    105628016
   03430 Mismatch repair
    105628016
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:jcu03032]
    105628016
   03400 DNA repair and recombination proteins [BR:jcu03400]
    105628016
Enzymes [BR:jcu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     105628016
    6.5.1.6  DNA ligase (ATP or NAD+)
     105628016
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     105628016
DNA replication proteins [BR:jcu03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    105628016
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     105628016
DNA repair and recombination proteins [BR:jcu03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     105628016
   NER (nucleotide excision repair)
    Other NER factors
     105628016
   MMR (mismatch excision repair)
    Other MMR factors
     105628016
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 FAM76
Motif
Other DBs
NCBI-GeneID: 105628016
NCBI-ProteinID: XP_012064703
LinkDB All DBs
Position
Unknown
AA seq 804 aa AA seqDB search
MLSLRSFSSLSFISLPHRIISPSSFFVSYPSSNSSFLSNLLYLSVSSHSKSTMSSSRPNA
FDTIMANARRASQNKSQSKSQSTSTPKKRKSPGTGNIVQTVNSSQPRQNPPIPDSRPPSQ
NKIDESKVDKELVNEPQNPSSEKPSLPLVTTKKQRVEIAELRRKIESLKKSPMEFDPKTV
LFWEKGEKVPFKFACLAFELIEKESGRILITNMACNMLRTVMDTTPDDLLALVYLMGNRV
APPHEGVELGVGEQILMKALSEAFGRNIDQVKRRLDVVGDLGLVAQESRSSQSMMRKPDP
LTVAKVFSTFKMIAKESGKDSQDKKKNHVRALLVAAADCEPLYLIRLLQAKLRISLAGKT
LLAALGQAAVCTAKCSTPPSDIKSPLEEAAKIVKQVYSVLPVYDKIVPALLSDGVWNLPN
ICSFTLGVPIGPMLANSVTSISQIINKFENMVFTCEYKYDGERAQIHYLENGSVEIYSRN
AERNTGKYPDVVSTISRLKRPAVKSFVLDCEIVAYNREERKILPFQNLIKRARKNVAVSD
IKVDVCIFAFDVLYLNGEQLIQEQLEVRRQRLYESFEEDPGFFQFATAVTSNDLEEIQKF
LDAAIGASCEGLIIKTLNKDATYEPSKRSNNWLKLKKDYMESFGDALDLVPIAAFHGRGK
RTGFYGAFLLACYDHNKDEYQSICKIGTGFSDELLQNLSNSLRSKMIAKPKSYYRYGDKI
NPDVWFEPSEVWEVKAADLTISPAHPAAFGLVEEDKGISLRFPRLVRVREDKSPEEATSS
EQVAQLYRNQDNNHKKVQDDVDDD
NT seq 2415 nt NT seq  +upstreamnt  +downstreamnt
atgctctctctacgttcattttcttctctatccttcatttctcttcctcaccgtattatt
tccccctcttctttcttcgtctcttacccctcctctaattcctcttttctctctaatctc
ctttatctctctgtaagctcccactctaagtccacaatgtcatcctctcgccccaacgcc
ttcgacactatcatggcaaatgcacgacgcgccagccagaataaatcccagtcgaagtct
cagtccacctccacccccaagaaacgcaaaagtccaggcactggaaacattgtccaaacc
gtaaattcttcccaacctcggcagaatcctccaatccctgactcaagaccaccatctcaa
aataaaatagacgaatctaaagtggataaagaattggtgaatgaaccccaaaaccctagc
tctgaaaaacctagtttaccactcgtcaccaccaagaaacagcgtgttgaaattgcagag
ttgagaagaaagattgagtcattgaagaagtctccaatggaatttgaccccaagacagtg
ttgttttgggagaaaggcgagaaggttccttttaaatttgcttgtttggcttttgagttg
attgaaaaagagagtggaaggattttgatcactaacatggcctgcaatatgttgagaact
gtaatggatacgacgcctgatgatttactggctttagtatatctaatggggaacagggtt
gctcccccgcatgaaggagtggagctgggcgttggagaacaaatacttatgaaggcactt
tcggaggcatttgggaggaatattgatcaagtcaagcgtcgattagatgttgtaggagat
ttgggacttgttgctcaagaaagccgttcatcacagtctatgatgcgcaagcctgatcca
ttaacagttgccaaggtttttagtaccttcaagatgattgccaaggaatctgggaaggat
agtcaagataagaaaaagaatcatgtcagggcacttcttgttgcagccgctgactgtgaa
cctctgtatctaattcgtctgcttcaggcaaaattgcgaatcagtttggcaggaaagact
cttttggctgcactgggacaagctgctgtttgtactgccaaatgctccaccccaccttca
gacattaagtctcctttagaagaggctgcaaagattgttaaacaagtgtactctgtactt
cctgtctatgataaaatagtacctgctcttcttagtgatggagtgtggaaccttcccaat
atctgtagctttacacttggtgtcccaattggaccaatgcttgcaaactcagtcacaagt
atttctcagataattaataagtttgagaatatggttttcacctgtgaatacaagtatgat
ggggaacgtgcccagatacattacctggagaatggttcagttgagatatatagtcggaat
gcagagcggaatactggaaaatatcctgatgttgtttctacgatttcaagattaaagagg
cctgctgtaaaatcatttgttttggactgtgaaatagttgcttacaaccgagaagaaagg
aaaatcctgccctttcagaacctcattaaacgggcccgcaaaaatgttgcagtgagtgac
atcaaggttgatgtttgcatattcgcctttgatgtgttgtatcttaatggtgaacaactt
attcaggaacaactggaagttcgtaggcagcggctttatgaatcatttgaggaggaccct
ggattttttcagtttgcaacagcagtaacatcaaatgatcttgaagaaattcaaaaattc
cttgatgctgctattggtgcaagttgtgagggtttgatcatcaaaacattgaataaagat
gctacatatgagccttcaaagagatcaaataactggctaaaattgaagaaggattacatg
gaaagttttggagacgcactggatcttgtacctattgctgctttccacggtcgtggtaaa
cgtacaggtttctatggcgcctttcttcttgcttgttatgaccacaataaggacgagtac
caaagcatatgcaaaataggcactggattttctgacgaactgctccaaaatctatctaat
agtcttcgctctaaaatgattgccaagccaaagtcatactataggtacggagacaagatt
aatccagatgtgtggttcgagcctagtgaggtttgggaggtgaaagctgcagacttgact
attagtcctgctcaccctgctgcatttggtctagtggaagaagacaagggtatatctctc
cggtttccacgtctagtacgtgtccgggaggacaagtctccagaggaagctacatcgtcc
gagcaggttgctcagttgtacaggaatcaggataataatcataaaaaggtccaagatgac
gtcgatgatgattga

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