KEGG   Jatropha curcas: 105631084Help
Entry
105631084         CDS       T03922                                 

Definition
(RefSeq) DNA ligase 4 isoform X2
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
jcu  Jatropha curcas
Pathway
jcu03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:jcu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    105631084
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:jcu03400]
    105631084
Enzymes [BR:jcu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     105631084
DNA repair and recombination proteins [BR:jcu03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     105631084
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 DNA_ligase_A_C PTCB-BRCT RNA_ligase BRCT DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID: 105631084
NCBI-ProteinID: XP_012068473
LinkDB All DBs
Position
Unknown
AA seq 1158 aa AA seqDB search
MTNETKFSVMVSLFEWIQKTKYPAKKRSKFRKFLDTFCKPDDYFSAIRLILPRLDRERGS
YRLKESVLATCLVDALGMSRESTDAVRLFNWRKGGAKTGANAGNFSLVAFEVLQHRQGMS
SGGLTVKELNDLLDSLALSENREEKTSVLSNLIKKTNAQEMKWIIMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLKDRSLRHKRQDIEVGKAVRPQLAMRVSDAHSAWK
KLHGKEVVVECKLDGDRIQIHKNGAEVQYYSRNFLNHFEYGHGMSNIITQNVVADRCILD
GEMLVWDSSLNRFAEFGSNQEIAKAAKDGLDSDRQLCYVAFDILYVGDTSVIHQSLRERH
DLLRKFVKPLKGRLEILVPDGGLNNRRLPGEPPCSLIAYNMNDVERFFEETVKNRDEGII
LKDLGSKWEPGDRSGKWLKLKPEYIQAASDLDVLILGGYYGSGRHGGEVAQFLVGLAERP
AADTYPRRFISFCRVGTGLSDDELAAVVTKLKPYFRKYEYPKKSPPSFYQVTNNSKERPD
VWIESPEKSIILSITSDIRTISSEVFAAPYSLRFPRIDRVRYDKPWYECLDVQSFVELVH
SSNGTTQKGKDSGGLQDRKQTSVKSSKKGGRKNASVVPSHFIETDVSDVREETLIFSKMM
FYFVNVPPTHSLESLHKMVIENGGTFSMNLNKSVTHCIAAENKGIKYQAAKLHGDVIHCS
WVLDCCSQKKLLPLQPKYFLFLSEASKKKLQEEIDEFSDSYYWDIDLADIKQLLENINAS
EDANRIEYYKRKYCPKDKWSLFYGCSVYFYLPTQFLTPDWETLLGLKSRRLKLEVLMGGG
YVSNNLANATHMLVLTVPGISNIDFDALTKSFTGKDKYFLLNKRLSVIGYQWLEDSLEKQ
KKLEEETYSLKPSGLQELNIEKCNYDLDNDQKLPSFPGCQTEEQGRTSFEHASISASPKR
DVKRKRGGLAGRSVKKGKAGISRARKTQTRVGKPAKICEYESDENNSSDDETKGEIKMSK
NAEISKKSSEIKESKTEESESSHIHMSAENEVTERREDQSSDVEICEGQRDEWFDKTPNI
AKGEGQYGKEKENSEKLEVMVDPVHAMLLDMIPGLGMKKMEKPKPFPDNERPAIDPTAPP
AKKKKVSYKDIAGELLKD
NT seq 3477 nt NT seq  +upstreamnt  +downstreamnt
atgacgaatgaaaccaagttcagtgtgatggtgagtttgttcgaatggatacagaagacc
aaatacccagcaaagaagcgttccaagtttcgcaagttccttgacactttctgtaagccc
gacgattacttctcagcgattcggttaattcttccaaggctcgaccgagagagaggctct
tacagactcaaggagtcggtgctcgccacctgccttgttgatgctctcggaatgtccagg
gagtcaaccgatgctgttcggctcttcaattggcgcaaaggaggcgccaagactggcgcc
aatgccggaaatttctcactcgtcgcttttgaggtcctccaacataggcaaggaatgtca
tcaggtgggctaacagtaaaggagttaaatgacttgcttgatagcttggcattgagtgaa
aatagggaagaaaaaacttcagttctttccaatctgattaagaagacgaatgctcaggaa
atgaaatggattatcatgataattctcaaagatttgaaattgggaattagtgaaaaaagc
atatttcatgaatttcatcctgatgccgaagacttgtttaatgtcacatgtgacttaaaa
ttagtttgtgaaaagttgaaggatcgaagcctaaggcataagcgccaggacattgaggtt
ggaaaggctgtacgccctcaactagctatgagagttagtgatgcacattccgcatggaaa
aagcttcatgggaaggaagtagttgttgaatgtaaacttgatggtgatcggatacaaata
cataagaatggggcagaagtacaatactactcaaggaattttcttaatcactttgaatat
ggacatggaatgtcaaacatcattactcaaaatgttgtggctgataggtgtatactcgac
ggtgaaatgttggtttgggattcctctttgaatcggtttgctgaatttggttcaaatcag
gaaatagcgaaggcagcgaaagatggacttgacagtgatagacagttgtgctatgttgct
tttgacatcctttatgttggagatactagtgtcattcaccaaagcttaagggaaagacat
gatcttctccgaaaatttgtgaagcctttgaagggccgtttagagattctagtacctgat
gggggtctcaataatcgacgtcttcctggggaacctccttgttcgcttattgcttataac
atgaatgatgttgagagattctttgaggagactgttaaaaatagagatgaagggatcata
ttaaaagaccttggctcaaaatgggaaccaggtgatcgaagtgggaaatggctgaaattg
aagccggagtacatacaggctgcttctgatttggatgttcttattttaggaggatattat
ggttctgggcgtcatggaggagaggtggctcaattcttggttggtctggcagagcgccct
gctgcagatacataccccaggcgattcatctccttttgcagagtgggcactggactatct
gatgacgagctagctgctgttgtaaccaaactgaagccttattttaggaaatatgaatac
ccaaagaagtcaccaccaagtttttatcaagtaacaaataattcaaaagagaggccagat
gtgtggattgagagccctgagaaatcgattatactttctatcacaagtgatattcggact
ataagctctgaggtatttgctgcaccatatagcttgagattcccacgcattgacagagtg
agatatgacaagccttggtacgagtgccttgatgttcagtcatttgttgaattggtacat
tctagcaatggtaccacacagaagggaaaagattctggaggcttgcaagatagaaaacaa
acaagcgtaaaatcctccaaaaagggaggaagaaagaatgcatctgttgttccatctcat
tttattgagactgatgtctccgatgttagggaggaaaccttgatattttcaaaaatgatg
ttttactttgttaatgtgcctccaactcactctctggagtccttacacaaaatggtcatc
gagaatgggggaacattttcaatgaatttaaataaatcagttacccactgtattgcagct
gaaaacaaggggattaaatatcaggcagcaaagcttcatggagatgttattcattgctca
tgggtattggattgttgctcacaaaaaaagctcctcccgttacagccaaagtacttcctc
ttcctttctgaagcttcaaagaagaagttacaggaagaaattgatgaattttctgattct
tactactgggacattgaccttgcagacatcaaacagcttttagagaacataaatgcttcg
gaagatgccaatagaattgagtattataaaagaaagtattgtccaaaggataaatggtct
ctcttttacggctgctctgtgtacttctaccttccaacacagtttttaacacctgattgg
gagaccttgttgggacttaaatcgaggaggttgaagcttgaagttctcatgggtggtggc
tatgtcagcaataatcttgcaaatgctacccatatgttggtcttgacagtgccaggaata
tccaacattgattttgatgctcttacaaagagttttacaggtaaagacaaatatttcctc
ttgaataagaggttgtctgtgattggatatcagtggttggaggactccttggaaaaacag
aaaaaactggaagaggagacatacagcttgaagccctctggtttgcaagagttgaatatt
gaaaagtgcaattatgatctggataacgaccagaaacttccatcttttcctggctgccaa
acagaagagcaaggcagaacttcctttgaacatgctagtatatcagcctcgcccaagaga
gatgtgaaacggaaaagagggggacttgctggcaggagtgtgaagaaaggaaaagcaggc
attagcagagctcgaaaaacacagacacgcgttggaaagcctgctaaaatatgtgaatat
gaatcagatgaaaacaattcatctgatgatgaaacaaaaggagagatcaaaatgagcaaa
aatgcagagattagcaagaaaagttcagaaatcaaagagagtaaaacagaagagtcagaa
tcatcacacatacacatgagtgctgagaacgaagttactgaaaggagagaggatcaatct
tctgatgttgaaatctgtgaaggtcaaagagacgagtggttcgataaaactcctaatatt
gcaaagggtgaagggcaatatgggaaggagaaagagaactctgagaaacttgaagttatg
gttgatccagttcatgccatgttattggacatgattcctggtcttggaatgaagaaaatg
gaaaaaccaaaaccatttcctgataatgaaaggccagctatagatcctactgcaccgcct
gcaaagaaaaagaaagtcagctacaaggatattgctggtgaactgctcaaggattga

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