Jonesia denitrificans: Jden_0580
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Entry
Jden_0580 CDS
T00972
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
jde
Jonesia denitrificans
Pathway
jde03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
jde00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Jden_0580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jde03021
]
Jden_0580
03400 DNA repair and recombination proteins [BR:
jde03400
]
Jden_0580
Enzymes [BR:
jde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Jden_0580
Transcription machinery [BR:
jde03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Jden_0580
DNA repair and recombination proteins [BR:
jde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Jden_0580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ACV08244
UniProt:
C7R0T7
LinkDB
All DBs
Position
626830..630342
Genome browser
AA seq
1170 aa
AA seq
DB search
MAASRTPSAPTADAIATRTASRRVSFAKIYEPLEVPDLLGLQVDSFDWLIGHDRWRARVD
AAKAAGRKDVPETSGLEEVFQEISPIEDFGQTMSLSFSNYRFEPPKHTADECKDKDFTYA
APLFVTAEFFNYNTGEIKSQTVFMGDFPLMTERGTFIINGTERVVVSQLVRSPGVYFERT
PDKTSDKDILSAKIIPSRGAWLEFEIDKRDAVGVRVDRKRKQSVTVLLKALGMSESEIRE
TFAEFPVVLDVLEKDSVHTEEEALVDLYRKIRPGEPPTVEAGRNLLENFYFKPKRYDLAK
VGRYKLNKKIGVDAAIDQAVLSLDDIIATIKYLAALHADKNSMSVDIDGQATDIRVETDD
IDHFGNRRIRAVGELIQNQIRTGLSRMERVVRERMTTQDVEAIAPQTLINIRPVVAAIKE
FFGTSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETP
EGPNIGLIGSLASFGRINPFGFIETPYRKVENGRVTEELVYLTADDEDRYVIAQANTPLN
EDGSFAQDRVLVRTKGGETDDVLAAAVDYMDVSPRQMVSVATALIPFLEHDDANRALMGA
NMQRQAVPLVRSEAPYVGTGMEWRAAVDAGDVIVATKPGVVTEVSADLIVVANDDGTTTS
YRVSKFRRSNQGTSYNQRVVAVQDERVEVGTVLADGPATDGGELALGRNLLVAFMSWEGH
NFEDAIILSQRLVQDDVLSSIHIEEHEIDARDTKLGPEEITRDIPNVSEDVLADLDERGI
IRIGAEVTSGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGTVIA
IRTFNREDGDELPAGVNELVRVYIAQRRKITAGDKLAGRHGNKGVISTILPVEDMPFLED
GTAVDVILNPMGVPGRMNVGQVLEVHLGWIASRGWDTSLVTEGNLDWKDTLPEFAHKVAP
GTPVATPVFDGLEEEALVGLLKSTLPSRDGDQLVQADGKARLFDGRSGEPFPEPISVGYM
YILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEL
LTIKSDDVPGRVKVYEAIVKGENIPDSGIPESFKVLLKEMQSLCLNVEVLSSDGVSIEMK
ENDDEVYRAAEELGIDLSRRPNAASSIDEI
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
ttggctgcctcgcgcaccccttctgctccgaccgccgacgccatcgccacgcgcaccgcg
tcacgacgtgtctcattcgcaaagatttacgaaccactcgaggtaccagacctcctcggt
ctgcaagttgatagtttcgactggctcatcgggcatgaccggtggcgcgcccgcgtcgac
gctgccaaagcagcgggacgcaaagacgtgcccgaaacgtcagggttggaagaggtcttc
caagagatctctcccatcgaagacttcggtcaaacgatgtccttgtcgttctcgaactac
cgcttcgagccaccaaaacacaccgctgacgagtgtaaagacaaagacttcacctacgca
gctccgctgtttgtgacagcagagttcttcaactacaacacgggtgaaatcaagagccaa
accgtcttcatgggtgacttcccactcatgaccgaacgaggcaccttcatcatcaacggg
accgagcgtgtcgttgtgtcccagttggtgcgttcgccaggtgtctactttgaacggaca
ccggataaaaccagcgacaaagacattctctccgcgaagatcatcccctcgcgcggtgca
tggcttgagtttgaaatcgacaagcgtgacgctgtcggtgtgcgcgttgaccgcaaacgt
aagcaatcagtgactgttctcctgaaggcgcttggcatgtccgagtcggaaatccgggaa
accttcgctgaattccctgttgtccttgacgttctcgaaaaggactcagtgcacaccgaa
gaagaggctctcgtcgacctctaccgtaaaatccgtccaggtgagccacccacagttgag
gctggacgtaacctgctggagaacttttacttcaagccaaagcgttacgacctcgccaag
gttggccgctacaagctcaacaagaagatcggtgttgacgcagccatcgaccaggctgtt
ttgagcttggacgacatcattgcaacgatcaagtaccttgctgcactgcacgcagacaag
aactcaatgagtgtcgacattgacggtcaagcaaccgatattcgcgttgaaactgacgac
attgaccacttcggtaaccgtcgcattcgcgctgttggcgagttgatccaaaaccaaatc
cgtacgggtctttcccgcatggaacgtgtcgtgcgggaacggatgacaacgcaagacgtt
gaagcgatcgcaccacaaacactcatcaacatcagaccagtcgtagcagcgatcaaggag
ttcttcggaacctctcagttgtcgcagttcatggaccagaacaacccgctcgccggtttg
acccacaagcgccgcctgtcagcgcttggtccaggtggtttgtctcgtgaccgggcaggc
atggaagtgcgagatgttcacccatcccactatggccgcatgtgccccatcgagacacca
gaaggccccaacattggtctgattggttcgcttgcctcctttggtcgcatcaacccgttc
gggttcattgagacgccttaccgcaaggtggagaacggtcgtgtcactgaggaactcgtc
tacctcaccgctgacgacgaagaccgctacgtcattgcccaggcaaacactcctctcaat
gaggacggctcattcgctcaggaccgagttctcgtccgtaccaagggtggcgaaaccgac
gacgtccttgcagcggccgtggactacatggacgtctccccacgccagatggtgtctgtc
gctactgcgctgattccgttccttgagcacgacgatgcgaaccgtgcgctcatgggcgcg
aacatgcaacgccaggctgtgccgctcgtgcgtagtgaagctccctacgtgggaactggt
atggaatggcgtgcagcagtggacgccggagacgtcatcgtggcaacaaagcccggtgtc
gtcactgaagtgtctgctgatctcatcgttgttgccaacgatgacggaaccacaacgtca
taccgcgtctccaagttccggcgctccaaccaaggaacgtcctacaaccaacgagtagtt
gccgtccaagacgaacgcgttgaagtgggaacagtccttgctgatggtccagcaaccgat
ggtggtgaactggcactcgggcgaaacctcctcgtggcgttcatgtcatgggaagggcac
aacttcgaagacgcgatcatcctgtctcagcgtcttgtccaggacgatgtcctgtcatcc
attcacatcgaagaacacgaaatcgatgcgcgtgacaccaagcttggtccagaggaaatc
acacgagacatcccgaacgtctccgaagacgtcctcgccgaccttgacgaacgcgggatc
atccgcatcggtgctgaggttacctccggtgacatcctcgtcggtaaagtgacaccgaag
ggtgaaactgaactcaccccagaagagcgtctgctccgtgcaatcttcggtgaaaaagct
cgtgaagttcgcgacacctcgttgaaggttccacacggtgaatccggcacagtgatcgcc
atccgcaccttcaaccgtgaagacggtgacgagctgccagctggagtgaacgagctcgtt
cgtgtgtacatcgcacagcgccgtaaaatcactgccggtgacaagcttgccggtcgtcac
ggaaacaagggtgtcatctcgaccatccttccagtagaggacatgccattccttgaggac
ggaaccgctgttgacgtcatcttgaaccccatgggtgttccaggacgtatgaacgttggc
caggttctcgaagtgcacctgggatggatcgcaagccgcggatgggacacctccttggtg
accgagggcaatctggattggaaggacacccttccagagttcgctcacaaagtggctcca
ggaacccccgtggcgaccccagtctttgacgggttagaagaagaagcgcttgttggtttg
ctcaagtcgacgcttccctcacgcgatggtgaccagttggttcaagctgacggtaaggct
cgcctctttgatggtcgttcgggagagccgttccccgagcccatctcagtgggttacatg
tacatcttgaagctgcaccacctcgtcgatgacaagatccacgctcgttccactgggcct
tactcgatgattacgcagcagccactcggtggtaaagcccagttcggtggtcagcgattc
ggagaaatggaagtgtgggcgctcgaagcatacggtgccgcatacacactccaggaactg
ctcacgatcaagtcagacgacgttccaggacgtgtcaaggtctacgaagcaatcgtcaag
ggcgagaacatccctgactccggtatcccagaatcattcaaggtcctcctcaaagagatg
cagtcactgtgcctcaacgtggaagtcctttcctccgatggcgtctccattgaaatgaag
gagaacgacgacgaggtataccgtgcagcggaagaactcggcatcgacctgtcacggcgt
ccgaacgccgcatcaagcatcgacgagatctga
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