KEGG   Juglans regia (English walnut): 108989700Help
Entry
108989700         CDS       T05245                                 

Definition
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
jre  Juglans regia (English walnut)
Pathway
jre03030  DNA replication
jre03410  Base excision repair
jre03420  Nucleotide excision repair
jre03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:jre00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108989700
   03410 Base excision repair
    108989700
   03420 Nucleotide excision repair
    108989700
   03430 Mismatch repair
    108989700
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:jre03032]
    108989700
   03400 DNA repair and recombination proteins [BR:jre03400]
    108989700
Enzymes [BR:jre01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     108989700
    6.5.1.6  DNA ligase (ATP or NAD+)
     108989700
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     108989700
DNA replication proteins [BR:jre03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    108989700
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     108989700
DNA repair and recombination proteins [BR:jre03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     108989700
   NER (nucleotide excision repair)
    Other NER factors
     108989700
   MMR (mismatch excision repair)
    Other MMR factors
     108989700
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DUF5562
Motif
Other DBs
NCBI-GeneID: 108989700
NCBI-ProteinID: XP_018818956
UniProt: A0A2I4EHT2
LinkDB All DBs
Position
Unknown
AA seq 784 aa AA seqDB search
MLSLRSCYCLRHPPSLSHPLKALSFSPFPTIPFSPSLKPFASTNPKPFTMSSRPSAFDAL
MSGARAAAKKKPLPRSSSPNKRKSLDSDSPSNTSIPNSLAPDISISQELKSLDESIGSDA
APAAKKNKIRAVTVEQTISQFKTKMPQLKKKAGDFDPCSVAWWGEGERVPFIFLSLVLDM
ISNETGRIVITDIVCNMLRTVIHTTPDDLVAVVYLSANRIAPAHEGLELGIGDASIIKAL
AEACGRTEVQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTVIKVFNTFRLIAKESGKD
SQEKKKNHIKGLLVAATDCEPQYLIRLLQMKLRIGLAEQTLLAALGQAAVYTEKHSTPPP
NIQSPVEEAAKIVKQVYSILPVYDKIVPALLSGGVWNLPKACNFTPGVPLGPMLAKPTKG
VSEIVNKFQDMEFTCEYKYDGERAQIHYMDNGSVEIYSRNAERNTGKFPDVVIAISRLKK
PSIQSFVLDCELVAYDREKQKILPFQVLITPARKNVAVSDIKVDVCIFAFDMLYLNGQPL
LQEELKVRREHLYNSFAEERGFLQFATAIISNDLEEIQKFLDTAVDSSCEGLIIKTLTRD
ATYEPAKRSLNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEF
QSICKIGTGFTEAILEERSASLRSKVIPKPKPYFRYADSMNPDVWFEPTEVWEVKAADLT
ISPVHRAAIGIVDPDKGISLRFPRLVRIREDKTPEQSSSSELVADMYNAQKHNHPNNQDD
NEDE
NT seq 2355 nt NT seq  +upstreamnt  +downstreamnt
atgctctcgctccgttcatgctactgcctgcggcatcctccctcactttctcaccccctc
aaggccctctctttctctcccttccccaccatacctttctctccttctctgaagcccttt
gcttccacaaaccctaaacccttcaccatgtcatctcgcccttccgcttttgacgccctc
atgtccggcgctcgggctgccgccaagaaaaagcccctaccccgctcctcttctcccaac
aaacgcaaatccctagattcagactctccctcaaacaccagcatccccaattctttagcg
cccgatatctcaatttcccaggaattgaagagcttggatgagagcattgggtccgacgcc
gcccccgcagctaagaagaataagatccgtgcggtgaccgtggagcagactatttctcaa
tttaagaccaaaatgccacagttgaagaagaaggcgggggacttcgatccatgctcagtt
gcatggtggggtgagggtgagagggttccattcatttttctcagtttggtcttggacatg
atttccaacgagactgggcgtattgtgattacggatatagtgtgtaatatgttgaggact
gtgatacatacaaccccggatgatctggtggcggttgtttatctttctgcgaacaggatt
gcgccggcgcacgaaggtttggagctaggaattggggatgcttccataattaaggcactc
gcggaggcttgtgggaggacagaggtgcaggttaaaaagcaatacaaggaattgggtgac
ttgggtcttgtggcaaaagcaagccgttcatctcaatctatgatgcgcaagcctgatgcc
ttgactgtcatcaaggtttttaatacattccggctgattgctaaggaatctgggaaagat
agccaagaaaagaaaaaaaaccacatcaagggactacttgttgctgccactgactgtgaa
cctcagtatctaattcgtctacttcagatgaagttgcgcattggattggcagagcagacc
ctattagctgcattgggtcaagctgctgtctatactgaaaaacattctacaccacctcca
aacattcagtctccagtagaagaggctgcgaagattgttaaacaagtatactctatactc
cctgtctatgacaagatagttcctgctcttcttagtggtggtgtatggaatcttccaaag
gcatgtaactttacacctggtgtcccacttggacctatgctagcaaagccaaccaagggg
gtatctgagattgtaaataagtttcaggatatggaatttacctgtgaatacaaatacgat
ggagaacgtgcccagatccattatatggacaatggttcagtggagatatatagtcgaaat
gcagagcgaaacactggaaagtttcctgacgttgtcattgcaatttcaaggttaaagaag
ccatctattcaatcatttgttctggattgtgaacttgttgcctacgaccgtgaaaaacag
aaaattctgcctttccaggtcctcatcactccagctcgtaaaaatgtggctgtgagtgat
atcaaggttgatgtttgcatatttgcttttgatatgttgtatcttaatggccaaccgctt
cttcaggaagagcttaaagttcgtagggagcacctttacaactctttcgcggaagagcgt
ggatttttgcagtttgcaaccgcaataatatcaaatgatcttgaggaaatacagaaattt
cttgacactgctgttgattcaagttgtgagggcttaattattaaaacattgactagagat
gctacatatgagccagccaagcggtcactcaattggttaaaattgaagaaagattacatg
gatagtattggggactcgctagatttggtacctattgcagctttccatggccgtgggaag
cgtacaggtgtctatggcgcttttctccttgcttgttatgacagtaataatgaagaattt
caaagcatttgtaaaataggcacgggatttactgaagcaatccttgaagagcgttctgcc
agtctacgttctaaagtgattcctaaaccaaagccgtacttccggtatgcagattcaatg
aatccagatgtatggtttgaacccactgaggtttgggaggtcaaagctgcagacttgact
attagccctgttcatcgtgctgcaattggcattgtggatcctgataagggcatttctctt
cgattcccacgcctggttcggattcgggaagacaagactcctgagcagtcctcttcatct
gagctggttgctgacatgtataatgctcaaaagcacaaccacccgaacaatcaagatgat
aatgaagatgagtaa

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