Juglans regia (English walnut): 109007225
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Entry
109007225 CDS
T05245
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109007225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jre03021
]
109007225
Enzymes [BR:
jre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109007225
Transcription machinery [BR:
jre03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
109007225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF2635
Motif
Other DBs
NCBI-GeneID:
109007225
NCBI-ProteinID:
XP_018842360
UniProt:
A0A2I4GEP2
LinkDB
All DBs
Position
3:complement(3082596..3105531)
Genome browser
AA seq
1708 aa
AA seq
DB search
MAQITEGTTEHVEAVRFSFFTDEEVREHSVVKVTNPILLDSMERPVPGGLYDPELGPLDE
RSLCKKCGQRSFHCPGHCGHIDLVSPAYNPLLFNILYNLLQRTCLFCHHFRASRSQVETC
ISQLKLIVKGDVVGAKRLDSDTPGETSYPNDGDWSQSHDAKYLRRQGWTSLQFMEAMSVF
KKFLRPRFVVCKSCGAKNPKISKPTFGWFHMSGMSGADARRNAIRGCKLGRSATGGTNGK
SLPEVENTDDMTQWGDVVDIVETDPSSVASPGAKDSATKKQRKKGGELLLDFVKQKDLFS
GPLLPSEVKEIVKLLWENESQLCSFISDIQHQGFKVKDSEPKTDYSMFFLETILVPPIKF
RPPSKGGDSVMEHPQTVLLGKVLQSNISLGNAHVNNLERSKIVSRWMDLQQSINVLFDSK
TATGQGQRNVASGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFA
LRLTYPERVTPWNVVKLRNAIINGSDIHPGATQYGDKLDTKQLPPSRKGRIAISRKLPSS
RGLLTQHGKSCDYEFEGKFVRRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMH
YANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHVVSA
VLLTKKDTFFTGDEFNQLLYCAGISTARPVSFLGKFGQKVCMLNSEDEMQPLLPAIWKPV
PLWTGKQVISALLNHITKGHPPFTVEKDAKLPRDFFKSGSDEDELNKEEKADKKGTKERV
LDDKKLSKGKRVDGNASKKKEPDEDKLLIYRNDLVRGVIDKAQFGEYGLVHTVQELYGSN
TAGILLSALSRLFTAFLQVHGFTCGVDDLLLMKKKDDDRDKNLQDCEKVGEEVHRMFVSD
KGGDKIDLLQLKIEEKIRSNGEPALTDLDRKMISKLNEELSKNFFKELLSRGLLKPSGKN
CISLMTTSGAKGASVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPPWDWAARAGGFII
DRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKICYDHTVRDADG
SIIQFCYGEDGVDVHQTSYIAKFEALAANKEMIFKKCGQELQKSNSYIKELPCALEEKAK
EFVRAYSLRQRNPNDLKEADFLKLMEHKYVLSLAQPGEPVGVLAAQSVGEPSTQMTLNTF
HLAGRGEMNVTLGIPRLQEILMTASSDIKTPVMTCPFQIGRSKEDASCLADKLKKITVAD
IIKNMKVSVIPFAVHDHQTCSIYKLEMMLHIPENYPKHTDITLEDWEGTLEVVFVRELED
AIQNHLLLLSKISGIANFMPDSQSNASNGTEDDDVSGNKSHREEENDDDNDADDGGGSED
LGMDAQKRKQQATDEMDYGDSSEEEPDEGELSAVSESEIDHVEDEIEVSNDAVIGIVNVK
GVTCEPSELGKPSKHKLKDKRNQSEAKRKKRARGKLVKKEYDRAFFVKTKGMHFEVHFRF
TNEPHILLAQIAQKTAKKVYIQSFGKIDGCKVVTCKEKQVIYYGKNPKDRKDISSAEKEK
VPALQTTGVDFSTLWQFQDVLDVRYVYSNNIHAMLTTYGVEAARETIIREIQHVFGSYGI
SVNMRHLTLIAEYMTHSGGYRPMNRLGGIAESTSPFSKMSFETASKFIVEAAYHGETDEL
ETPSARVCLGLPVKMGTGCFDLMQKIEI
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatcacagagggtacaacagagcatgtcgaagcagttaggttcagtttcttt
acagatgaagaggttcgagagcatagcgttgtgaaggttacgaaccccattttgcttgat
agtatggagagacctgtacctggtggattgtatgatccagaattgggcccgctagatgaa
aggagtctctgcaagaaatgtgggcagcgttcattccattgcccaggtcactgtggtcat
attgatcttgtttcacccgcctataatccattgctatttaatattctttacaatcttctc
cagagaacttgtttattttgtcaccatttccgggcaagcagaagccaggttgagacatgt
atttctcaattgaaactcattgtgaaaggtgatgtcgttggggccaaaaggttagattct
gacacaccaggtgaaacttcatatcctaatgatggtgattggagtcagagtcatgatgcc
aagtatttaaggcggcaaggttggacctctcttcagtttatggaagcaatgtctgttttc
aaaaaatttctgaggccgaggtttgtggtttgtaagagttgtggggccaaaaatcctaaa
atcagtaaacctacctttggatggtttcatatgagtggcatgtcaggtgctgatgccaga
cggaatgctattcgaggttgcaagctaggaaggtcagccactggtggaactaatggaaaa
tctttgcctgaggtggaaaatacagatgatatgactcaatggggggatgttgttgatatt
gttgaaacagatccatccagtgtcgcctctccaggagctaaagatagtgctacaaaaaag
caaagaaaaaaaggaggggaactgcttcttgattttgttaagcagaaggatttattttca
ggacctctattaccatcagaagttaaagaaattgtgaagcttctatgggaaaatgagagt
caactctgctcatttataagtgatattcagcatcagggatttaaagtgaaagatagtgaa
ccaaaaactgattactctatgttcttcttagagactattcttgtacctccaatcaaattc
cggcccccatccaagggaggtgattctgtcatggaacatcctcaaactgttttgttgggt
aaggtgctacagtccaatatatcattgggaaatgctcatgttaacaacttagaacgctca
aaaatagtaagccggtggatggatctccaacaatctataaacgtgttgtttgatagcaaa
actgccacaggtcaaggtcaaagaaatgtagcttcagggatttgtcaattgctggaaaag
aaagaaggcatgttccgccagaaaatgatgggaaagagggttaattttgcttgccgctct
gtcatatcgccggatccctatttagcagttaatgaaattggaattcctccttattttgca
ttaagattaacctatcccgagagggtgactccttggaatgttgtcaagttgaggaatgct
atcatcaatggttcggatattcatcctggagctacacaatatggtgataagctagatact
aagcaactaccaccaagtcgcaaggggcgcattgcaatatcaaggaaattgccatcatca
cgaggtctcctcacacagcatgggaaaagctgtgattatgaatttgaaggaaaatttgta
cgtcgccacttgcaagatggggatattgtgcttgttaacagacagcccactctacacaag
cccagtataatggcacatgtagttcgtgtgttaaagggggagaaaacacttcggatgcac
tatgcaaactgcagtacgtacaatgctgattttgatggagatgaaatgaatgttcacttc
ccacaagatgaaatttctcgtgcagaagcttacaacattgtaaatgccaataatcaatat
gtcaagcccacaagtggtgaacccattagagccttgattcaagatcatgtcgtaagtgct
gtgcttcttacaaagaaggatacattttttactggcgacgagttcaaccagcttctttat
tgtgctggcatctctactgctcgtccagtttctttcttaggaaaatttggccagaaagtt
tgcatgttgaactctgaagatgagatgcagccccttctgccggcaatatggaaaccagtg
cctctgtggactgggaaacaggtgattagcgccttgctaaatcatattactaagggtcac
cctccatttactgttgaaaaagatgcaaaactcccacgtgatttttttaagagcgggagt
gatgaggatgaactgaacaaagaagaaaaggctgataaaaagggaacaaaggaaagggtg
ctggatgacaagaaacttagtaaagggaaaagggttgatggaaatgcatcaaagaaaaag
gagcctgatgaagataaactgttgatatataggaatgacttggtgcggggtgtgattgac
aaggctcagtttggtgaatatggtttggttcatacagtgcaggagctctatggctcaaac
actgcagggatcctgctttctgcgttgagccgtttatttactgcttttttgcaggtgcat
gggttcacctgtggagtagatgatcttttgctaatgaagaaaaaagatgatgacagggac
aaaaaccttcaagattgtgagaaagttggtgaagaagttcaccgtatgtttgttagtgat
aagggtggtgataaaatagatctcctgcagctgaaaattgaagaaaagatacgcagtaat
ggagaacctgcattgacagacttggacaggaagatgataagcaagctcaatgaagaatta
agtaagaacttcttcaaagagttgttgtccagagggttattgaaaccctctggaaagaac
tgtatttctctcatgactacatctggggctaagggtgcatcggttaatttccagcaaata
tcttctcatttaggacaacaagagttagaaggcaaacgagtccctcgaatggtttctgga
aaaactttaccttgcttccctccttgggattgggcagctcgagctggtggctttattatt
gaccgctttcttactggtctccaccctcaagaatattactttcattgcatggctggtcgt
gaagggttggttgatacagcggtgaaaacatctcgcagtggatatctacaaagatgccta
ataaaaaatcttgagtgcctaaaaatttgttatgaccatactgttcgtgatgctgatggt
tccattattcaattttgctatggagaagatggtgtggatgtacatcaaacgagttatatt
gcaaaatttgaagcgctggctgcaaataaagaaatgattttcaaaaagtgtggtcaagag
cttcagaagtccaatagttacatcaaggaattgccttgtgcccttgaagaaaaagcaaag
gaatttgtgcgtgcatactccttgagacaaagaaatcctaatgatttgaaagaagcggat
ttcttgaagttaatggagcacaaatatgtcttaagccttgctcagcctggagaaccagtt
ggagtgcttgctgcacagtctgtaggagagccatcaacacagatgacgttgaatacattc
catcttgctgggcgaggtgaaatgaacgtgacacttggaattccacgcctacaggaaata
ttgatgactgcttcaagtgatattaagacccctgtgatgacatgccccttccaaattggg
aggtcgaaggaggatgcctcttgtcttgctgataagttgaagaagataactgtagcagac
ataataaagaatatgaaagtatctgtcattccctttgctgttcatgatcaccagacctgc
agtatttataagcttgaaatgatgcttcacatacctgaaaactatccaaaacacactgat
attacattagaagactgggagggaaccctagaggttgtttttgtgagggagttggaggac
gccatacaaaatcatctgctcttgctttctaaaattagtggcattgcaaacttcatgcca
gattctcagtcaaatgcttcaaatgggacagaggatgatgatgtatctggaaataaatca
caccgtgaggaagaaaatgatgatgacaatgatgctgatgatggaggggggtctgaggat
cttggtatggatgcacaaaagagaaaacagcaagcaacagatgagatggattatggggac
tcttctgaagaggaaccggatgaaggggagctgtcagctgtctctgaaagcgaaattgac
catgtagaggatgaaattgaagttagtaacgatgctgtgattgggatagtcaatgtcaaa
ggtgtaacatgtgaaccatcagaacttggaaaaccctctaagcataagttgaaggataag
agaaaccaatcagaagccaaacgaaagaagagagccagaggaaaactagtaaaaaaagag
tacgatagagcattttttgtgaaaaccaagggaatgcactttgaggtccattttcgattt
accaacgaacctcatattttactggctcagattgctcaaaaaacagccaagaaggtttac
atccagagctttggtaagattgatgggtgtaaagtagttacttgcaaagaaaaacaagtg
atatactatggtaaaaatcccaaagacaggaaggatatctcgtctgcagaaaaagaaaaa
gttccagcactgcaaaccacaggtgtggatttcagtactttgtggcagtttcaggatgtt
cttgatgtcaggtatgtatactccaacaacatccatgccatgctaaccacgtatggggtg
gaagccgccagagaaactatcatcagggaaatccagcatgttttcggttcgtatgggata
tctgtgaatatgcggcacctaaccctcattgccgagtatatgacccattcgggtggatat
cgtccaatgaacagacttgggggaatagcagagtcgacgtctcctttcagcaaaatgtct
tttgagacggcttcaaagttcattgttgaagctgcatatcatggagaaacagacgagttg
gagactccatctgctagggtctgtcttggattgccagtgaagatgggtactggatgtttt
gatttgatgcagaagatcgaaatctga
DBGET
integrated database retrieval system
