Juglans regia (English walnut): 109018917
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Entry
109018917 CDS
T05245
Name
(RefSeq) RNA-dependent RNA polymerase 1
KO
K11699
RNA-dependent RNA polymerase [EC:
2.7.7.48
]
Organism
jre
Juglans regia (English walnut)
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
jre03036
]
109018917
Enzymes [BR:
jre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.48 RNA-directed RNA polymerase
109018917
Chromosome and associated proteins [BR:
jre03036
]
Eukaryotic type
Gene silencing
RNA interference (RNAi) pathway
RDRC (RNA-directed RNA polymerase complex)
109018917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RdRP
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
109018917
NCBI-ProteinID:
XP_018856654
UniProt:
A0A2I4HKG2
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Position
16:9244392..9261016
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AA seq
1131 aa
AA seq
DB search
MGKTIHLSGFPSSVTAQEVQEFLERHTGEGTVYAIKIRPNRSGGQRANATVQFTSNRHAE
SIISLANVRLWYGRSYLKAWERERDIVPKPRTFLHSLENIILHFGCQISNEKFSILWRAV
NVCVNFGTGLRKFQFVLSLNSVEYKLEFSYENIWQIELHRPRGQTAKYLLIQLFGAPRIY
EKDSQPSDNLYENPLFNFFKDIPDDQWVRGVDFTPSCCIGQSSSLCLELPHGHQLPDFRE
NFAYYKESEGRYILESGSTFSCNLDLVPIVGPSPGVDLPYEILFKINSLVQNGCLAGPTL
DVRFYRLVNPRTINIDCIEHALDKLSHIQECCYDPLMWLNEQYRKYLKARHPPKSPAISD
SGLCYVRRVQITPSKVYFCGPEINVSNRVLRYFRDDIDNFLRVSFVDEDLDKMFSTDLSS
RVSSANEDRKTGIYKRILSVLRNGIVFAGKKFETLAFSSSQLRDNSIWMFASRHGLTAAD
IRAWMGNFCHIRNVAKYAARLGQSFGSSTETLTVHAREIEIIPDVELKWGGVNYVFSDGI
GKISAEFAKKVALKCGFKGSHPSAFQIRYGGYKGVVAVDPTSPMKLSLRKSMSKYKADNH
KKLDVLAFSKFQPCFLNRQLITLLSTLGVKDNVFENKQRQAIEQLDAILRDPLKAQEALD
LMSPGENTNILKEMLMCGYKPDAEPFLAMMLQTFRASKLLELRTKTRIFIPDGRAMMGCL
DETGTLEYGQVFVQFSSTRHKQSFNDSIMFGDHGSDQHFLVTGKVVVAKNPCLHPGDVRV
LRAVNVPALHHLVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDPELIPPRQNEPMDYS
PAKSMQLDHDVTIEEVEEYFVNYIVNDSLGIIANAHTAFADREPQKAMSGPCIELAKLFS
IAVDFPKTGIPAEIPRELRVKDYPDFMDKPDKPTYESHNVIGKLYREVKDIAPNNASFRS
FTVEMARRSYDPDMEIDGFEDFVDDAFFYKDNYDYKLGNLMDYYGIKTEAEILSGNIMRM
AKSFTKRRDAEAINVSIKSLRKEARAWFNEKGSGLDSGAEEVYAKASAWYHVTYHPSYWG
SYNEGMDRDHFLSFPWCVYDKLVRIKKNKASITRALYMSSLEHQFGHELHL
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atggggaagacaattcacttgtctggattcccttctagtgtgactgcacaagaagttcag
gaatttctggagcgacatacaggtgaaggtactgtttatgctattaagattagaccaaac
agaagtgggggtcaacgagcaaatgcaactgttcaattcaccagcaacagacatgctgag
tctattatctccttggctaatgtacgcttatggtatgggcgctcttatttgaaggcatgg
gaaagggagcgtgatatagtaccaaagccaagaacctttctgcatagcttggaaaacata
atactgcattttggctgtcagatctcaaatgaaaagttttcaatcctatggcgagcagta
aatgtttgtgtgaattttgggactgggttgcggaaatttcaatttgttctatcgcttaat
tctgtggagtacaagcttgaattttcctatgagaacatatggcagattgagttgcatcgc
ccacgtggtcaaactgcaaagtatcttctgatccagttatttggtgctccacggatttat
gagaaagattcgcagccttcagacaatttatatgaaaatccccttttcaattttttcaag
gatatccctgatgaccaatgggtcaggggagtggattttaccccatcatgttgcattggg
caatcttcttcattgtgtttggagcttcctcatggccaccagcttccagattttcgggag
aactttgcttattataaagaaagtgaaggaagatatattctggaaagtggttctactttc
tcttgtaatctggatctagttcctattgttggcccttctccaggtgttgatttaccgtat
gaaatcttgtttaaaattaactccttggttcagaatggctgtcttgctggaccaacactt
gatgttaggttttatcgcttggttaatccacgtactataaacattgactgtatagaacat
gcactggacaaactctctcatatacaggaatgttgctatgacccattgatgtggctcaat
gagcagtacagaaagtacctcaaagcaaggcatcctccaaagtcgcctgctatatcagac
tctgggttgtgttatgtacgcagggttcagataacaccttcgaaagtgtacttctgtggt
ccagaaattaatgtatcaaatcgtgtgctgcgctattttcgtgatgatatagataatttt
ctccgtgtctcatttgttgatgaggatttggataaaatgttttcaacagatttatcttct
cgggtgtcttctgcaaatgaagataggaaaactggaatctacaaaaggattctttctgtt
ctcagaaatggcatagtttttgctggtaagaagtttgagactcttgcattctcatcaagt
cagttacgggataattctatatggatgtttgcttcaagacatgggcttactgctgctgat
ataagagcctggatgggaaatttttgtcatattagaaacgtggcaaaatatgctgccaga
ctgggtcaatcctttggctcatccacagaaacgcttacggttcatgcacgtgaaattgaa
attatacctgatgtagagttaaaatggggtggagtcaattatgttttctctgatggaatc
gggaaaatatccgctgagtttgcgaagaaagtggctttgaaatgtggctttaaaggatcc
catccatcagcctttcagattcgatatggtgggtataaaggtgttgttgctgttgatcca
acctcaccaatgaaattatcattgaggaagagcatgtccaagtataaagcagataaccac
aagaaactagatgtcttggcatttagcaagtttcagccttgttttctgaatcgccagttg
atcactctgttgtctacccttggtgtgaaggataacgtttttgagaataaacaaagacaa
gctatagaacaactggatgctatactaagagatccattgaaggcacaagaggctcttgat
ttgatgtccccaggagagaatactaacattctaaaggaaatgctcatgtgtggttacaag
cctgatgctgaaccatttcttgctatgatgctgcagacattccgggcatcgaaattgttg
gagttgcgaaccaaaacaaggatctttattccagatggaagagcaatgatgggatgtcta
gatgaaactggaaccttagaatatggtcaggtatttgtacaattttctagcactagacac
aagcagtcgttcaatgattccatcatgttcggtgaccatggatccgatcagcatttttta
gttacagggaaggtggtggttgccaaaaacccatgcttgcatccaggcgatgtgcgtgtt
ttaagggctgtaaatgtgccggcattgcaccatttggtggattgtgttgtttttcctcag
aaaggattgagaccacatcccaatgagtgttctggaagtgatttggatggagatatctac
tttgtctgttgggatcctgaacttatcccacctcggcaaaacgaaccaatggattattcc
ccagcaaaaagtatgcagttggatcacgatgttacaattgaggaagtcgaggagtatttc
gtcaattacatagtcaatgacagcttaggtattattgccaatgcccacacggctttcgcg
gatagagagccccaaaaagcaatgagtggcccatgcatagagttggcaaaactattttca
atcgctgttgattttccaaagactggcataccagctgaaattccacgtgagcttcgggtc
aaagattatccagatttcatggacaagccagacaaacccacatatgaatcacacaatgtg
attggaaagctttaccgggaggtgaaagatattgctcccaataatgcttcttttaggtcc
ttcactgtagaaatggcaaggcgttcatatgaccctgacatggaaattgatggatttgaa
gattttgtcgatgatgctttcttctacaaagacaattatgattacaagttggggaacttg
atggactattatggcatcaaaactgaggctgaaattctcagtgggaatattatgagaatg
gccaagtctttcactaagagaagagatgcagaagcaattaatgtgtctatcaagtccttg
agaaaggaagctagagcctggttcaacgagaagggaagtgggttggattctggagctgag
gaagtgtatgcaaaagcttcagcatggtaccatgtcacgtatcatccaagttattggggt
tcctacaatgagggtatggatcgagatcattttctcagctttccatggtgtgtctatgac
aagctggtccgcattaagaagaataaagcaagtattacgagggctctgtacatgtcttct
ttggagcaccagttcggtcatgaattgcatttgtga
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