Kitasatospora albolonga: B7C62_27910
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Entry
B7C62_27910 CDS
T05009
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
kab
Kitasatospora albolonga
Pathway
kab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B7C62_27910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kab03019
]
B7C62_27910
Messenger RNA biogenesis [BR:
kab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B7C62_27910
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
DUF1732
Motif
Other DBs
NCBI-ProteinID:
ARF75657
LinkDB
All DBs
Position
6292837..6294522
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AA seq
561 aa
AA seq
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MSHPHPELGTPPKLPKGALRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEDEQPGI
DLILPDFTTIRDRLDDIEGIVLTHGHEDHIGGVPYLLRLKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVQEGQRERIGVFDCEFIAVNHSIPDALAVAIRTPAGMAVATGDFKMDQLP
LDGRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPERDISNVLRTVFANAQKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPAGLVVDVKTLDDLPD
DEVVLVCTGSQGEPMAALSRMANRDHQIRIVPGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGALTGVPKD
HIVIAEDGVVVDLIDGKAKIVGKVQAGYVYVDGLSVGDVTETSLKDRRILGDEGIISVFI
VVDSSSGKIVGGPHIQARGSGIEDSAFTGVTPKIQEALDKSAQDGVMEPHQLQQLVRRVV
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagccatccgcaccctgaactcggtaccccgccgaagctcccgaagggcgccctgcgg
gtcaccccgctcggcggcctgggcgagatcggccgcaacatgacggttttcgagtacggc
ggccgcctgctcatcgtcgactgcggcgttctcttccccgaggacgagcagcccggcatc
gacctgatcctgccggacttcaccacgatccgggaccgcctggacgacatcgagggcatc
gtcctcacgcacggccacgaggaccacatcggcggcgtcccgtacctgctgcgcctgaag
ccggacatccccctcatcggctccaagctgacgctcgccctcatcgaggcgaagctccag
gagcaccgcatccgcccctacaccctcgaggtgcaggaggggcagcgcgagcgtatcggc
gtcttcgactgcgagttcatcgcggtcaaccactccatcccggacgcgctggccgtcgcc
atccgcacccccgcgggcatggccgtggccaccggtgacttcaagatggaccagctcccg
ctggacggccggctcaccgacctgcacgcgttcgcccgcctcagcgaggagggcatcgac
ctcctcctctcggactccacgaacgccgaggttcccggcttcgtaccgccggagcgggac
atctccaacgtcctgcgcacggtcttcgccaacgcccagaagcgcatcatcgtggcgagc
ttcgccagccacgtgcaccgcatccagcagatcctggacgccgcccacgagtacggccgc
cgggtcgccttcgtcggccgctcgatggtccgcaacatgggcatcgcccgagacctcggc
tacctcaaggtccccgcgggcctggtggtggacgtcaagaccctcgacgacctcccggac
gacgaggtcgtgctcgtctgcacgggttcgcagggcgagccgatggcggccctctcccgg
atggccaaccgcgaccaccagatccggatcgtccccggcgacacggtgatcctggcgtcg
tcgctcatccccggcaacgagaacgcggtctaccgcgtgatcaacggcctgacccgctgg
ggcgccaacgtcgtccacaagggcaacgccaaggtccacgtctcgggccacgcctcggcc
ggcgagctgctgtacttctacaacatctgcaagccgaagaacctgatgccggtccacggc
gaatggcgccacctgcgggccaacgccgaactgggagccctcaccggcgtgcccaaggac
cacatcgtcatcgccgaggacggcgtggtcgtcgacctgatcgacggcaaggccaagatc
gtcggcaaggtccaggccggttacgtgtacgtcgacggcctctccgtcggcgacgtcacc
gagacctccctcaaggaccgccgcatcctcggcgacgagggcatcatctcggtcttcatc
gtggtcgacagctcctccggcaagatcgtgggcggcccccacatccaggcccggggctcc
ggcatcgaagacagcgccttcaccggcgtcacgccgaagatccaggaagccctggacaag
tcggcccaggacggcgtcatggagccgcaccagctccagcagctggtccgccgtgtcgtc
ggcaagtgggtctccgacacctaccgccgacgcccgatgatcctcccggtcgtcgtcgag
gtctga
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