Kazachstania africana: KAFR_0A05050
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Entry
KAFR_0A05050 CDS
T02487
Symbol
KAFR0A05050
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
kaf
Kazachstania africana
Pathway
kaf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
kaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KAFR_0A05050 (KAFR0A05050)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kaf03400
]
KAFR_0A05050 (KAFR0A05050)
Enzymes [BR:
kaf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KAFR_0A05050 (KAFR0A05050)
DNA repair and recombination proteins [BR:
kaf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
KAFR_0A05050 (KAFR0A05050)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
RNA_ligase
RTT107_BRCT_5
mRNA_cap_enzyme
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
13886058
NCBI-ProteinID:
XP_003955076
UniProt:
H2ANJ1
LinkDB
All DBs
Position
1:1003515..1006361
Genome browser
AA seq
948 aa
AA seq
DB search
MDLTVPEVEVPRNFAPSPQFKWLCEELFSKLEEVPNQRHLTTKRITLRYYEIITNFVNLW
RTTVGDDIYPALILALPYRDRRMYNVKDYTLIKAICTYLKLPKNSFTEKRLLNWKQRADR
SVKLSVSCVNEMRKRKSEPVEKSPITLDELNTLLDFLSQDRNIKGRGYKNLSESSIFTYC
IEKMSFMELRYFFDIILKARVIGPHEHKLLNAWHPDAEDYLSVVSDLKTVCTRLWNPNIR
LRHDELSINIGYAFAPHLAKKLSISYDKICKKLKNDFFIEEKMDGERIQIHYMDYGNDIK
FLSRRGVDYTYLYGENLSTGTIACYLKLNRDVKECVLDGEMVTYDEDQDILLPFGMVKSA
AMNALTKEEISGQDYHPLLMVFDLVFLNGSSLVEFPLYQRKDYLASVLEPYRARVQIVNF
TRCSNENIIRKSLEHAISVGSEGIVLKNYNSRYMIGSRNDSWIKIKPEYLEQFGENMDLI
VIGRDSAKKDSFYCGLTVLDEEEEKLVEEIDKGVVNLVSDESDYENPENNRHIKKVVSFC
MIANGISQNEYKEIYRKTRGFWKKTEEVPPPPELIEFGTQVPMEWIEPEHSVVLEIKARS
LDNTESSCKRFKAGCTLYGGYCRRIRDDVDWKSSFSLAELRRDRRIKHYPGTSEKDTLLK
SKKRRKKQLLTPLNQNLNPRDIQTTSKIFDGLFFYILSDYFDTNENVRISKDDLQKLLLE
NGGKISHNIVSKRESKSNLRILCGKYTAECNVLIKRGYDILSPQWVIDCVENKKIVKIEP
SHCFSVSDDLMALAMRRVDKYGDSYESLLSVSRLSYILRSSKDISPDLLSPANMSLDFEK
VPYFLFWRRKAFVMEHNFDKSSIRETILKIQLYGGKVVKNISECNIVIFPKAEITVIRES
MKFIRNTLAKTVSTSVELPMLPRIVSFEWIDASIEKNVQVPEEDYVPM
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggatctaaccgtaccagaagttgaagttcccaggaatttcgcaccttctcctcagttc
aaatggctgtgtgaggagttattttcgaaactagaagaggttccaaaccagagacattta
acaacaaaaagaataacattgaggtactacgaaatcatcactaattttgttaatctttgg
agaacaactgtaggcgatgacatatatcctgctctaatattggctttaccttatagggat
agaagaatgtacaatgttaaagactatacattgatcaaagcaatttgtacatatttgaag
ctaccaaagaattcattcacagaaaagcgactactgaattggaaacaaagagctgatcga
agcgtcaaactgtctgtgtcttgtgtgaatgaaatgcgcaaaaggaagagtgaaccagtc
gaaaaatcgcccattacacttgatgaactgaacaccttattagacttcctaagtcaagat
agaaacataaaaggacgcggctacaaaaacttatctgagtcttctattttcacttattgc
attgaaaagatgtcatttatggagttaaggtacttttttgatattatactcaaagcaaga
gttataggtccacatgaacataaacttttgaatgcatggcacccagatgctgaagattat
ttgagtgttgtttcagacctaaaaactgtatgtacaaggctttggaatccgaatatcaga
ctgcggcacgacgagctatcaatcaatattggatatgcttttgctcctcatttagccaag
aaattgagtatatcatacgataaaatttgtaaaaaattgaagaatgatttctttatagaa
gaaaaaatggatggcgaacgaatacaaatccattacatggattatggcaacgacattaaa
ttccttagcaggcgtggtgtagattacacatatttatatggtgagaacctgagtactggt
acgattgcatgctacctgaaacttaacagggatgtcaaagaatgtgtgttggatggtgag
atggttacctacgatgaggatcaagatatattactaccctttggaatggtaaaaagtgca
gcaatgaacgcattaactaaggaagaaatttctggacaagactatcatccccttttgatg
gtttttgacttggtttttttgaatggctcgtctttagtggagtttccactttatcaaagg
aaggattatttagccagtgtacttgagccatacagggcccgagtacaaattgttaatttt
acgagatgttcaaatgagaatataatacgaaaatcattagagcatgccatatcagttggg
tctgaaggaattgttttgaaaaattataattcaaggtacatgataggcagtaggaatgat
agttggatcaaaataaaacctgaatacttggagcaatttggtgaaaatatggatttaatt
gtaataggcagggattctgccaaaaaagactctttttattgtggtctcacggtgctggat
gaagaagaagagaaattagttgaagaaatcgacaaaggcgttgtaaatttggtttctgat
gagtctgactacgaaaatccggagaataataggcacatcaaaaaagtggtatcattttgt
atgattgccaatggcatttctcaaaatgagtacaaagaaatatacaggaaaacgagggga
ttttggaaaaaaactgaggaagttcctcctcctccagaactaatagaatttggtacacag
gtaccaatggaatggattgaaccagaacactcagtagtacttgagataaaagcaagatcg
ttggacaataccgaaagtagctgcaaaaggttcaaagctggatgtacgctttacggaggt
tattgcagacgtattagagatgacgtagactggaaatcctcatttagtctggcggaactt
agaagagatagaagaataaaacactatcctggtacgtcagagaaagatactcttttgaag
tccaagaaaagaaggaaaaaacagcttttgacgcctttaaatcaaaatttgaatccgagg
gatatccagacaacgtcaaaaatatttgatggtcttttcttctacatacttagtgattat
tttgatacaaatgaaaatgtgcgaataagcaaggatgatttacagaaattgttattagaa
aatggaggaaaaattagtcacaatatagtttccaaaagagaaagtaagtctaatctgaga
atactctgtggtaaatacactgcagagtgtaatgtcctgatcaaaagaggctatgacata
ttatctccacaatgggtcatcgactgtgtagaaaacaagaaaatcgttaaaattgaacca
agccattgtttcagtgtatctgatgatttaatggcgcttgcaatgagaagagtagacaaa
tatggtgatagctatgagtcgcttctatcagttagtaggctaagctacattttaagatct
tcaaaagacatttcaccagatttgctgtcacctgcaaatatgagtttagattttgaaaaa
gtcccatattttctattttggaggagaaaggcatttgtgatggagcacaatttcgataaa
agttcaataagggaaactatattgaaaatacaattgtatggtggaaaagtggtgaaaaat
atctctgaatgcaacattgtgattttccctaaagctgaaattactgtaatcagggaaagc
atgaaatttattcgtaatacactagctaaaactgtctcaacttctgtggagttacctatg
ctgccacgaatcgttagcttcgaatggatcgacgcctctatcgagaaaaacgtccaagta
ccagaagaagattacgttccgatgtag
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