Candidatus Kinetoplastibacterium desouzaii: CDSE_0309
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Entry
CDSE_0309 CDS
T02465
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
kde
Candidatus Kinetoplastibacterium desouzaii
Pathway
kde03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
kde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CDSE_0309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kde03400
]
CDSE_0309
Enzymes [BR:
kde01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CDSE_0309
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CDSE_0309
DNA repair and recombination proteins [BR:
kde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CDSE_0309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
OspE
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
AGF46653
UniProt:
M1L1K9
LinkDB
All DBs
Position
complement(103917..104744)
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AA seq
275 aa
AA seq
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MPELPEVEITKQGIRNRIFQKKLNKIVIRNNRLRWPIDNNTDEILKERIVLDCTRRSKYI
LIHFEHGIQFIHLGMSGSLQFSYLDKPLEKHDHVEWIFEEFALRLNDPRRFGAVIWHPYE
NGPIELHPLINKLGIEPFSNDFTGEYLYNKFKINNTNIKQALLNGKIVVGIGNIYASEIL
FKSRINPFLKTKYLSINQCEELAQIIIETLNEAIASGGSSIKNFVDSNGKQGSYIEKYAY
VYNREGKQCKICKKNDIIKIYQNNRSTYYCPLCQD
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactacctgaagtagaaattactaaacaaggaataagaaatagaatattccag
aaaaaactaaacaaaattgtcattagaaataatcgtctacgttggcctatagataataat
acagacgaaatactaaaagaaagaatagttttagactgcaccagaagaagtaaatatata
ttaattcattttgaacatggaattcaatttatccatcttggaatgtcaggatcattacaa
tttagctacttagacaaaccactagaaaaacatgatcatgtagagtggatttttgaagaa
tttgctctaagattaaatgatcctagacgtttcggtgcagttatatggcacccatatgaa
aatggcccaatagaattacatccgttaattaataaattaggaatagaaccattttccaat
gattttactggagaatatctttataataaatttaaaatcaataatactaatataaaacaa
gcattactaaatggaaaaatagtagtaggtataggaaatatatacgcatcggagatttta
tttaaatccagaattaacccattcttaaaaaccaaatatttgtcaatcaatcaatgcgaa
gaattagcacaaataattatagaaactctaaatgaagcgattgcatctggaggaagctca
ataaaaaacttcgttgactccaacggcaaacaaggatcatacatagaaaaatatgcttat
gtatataatcgagaaggtaaacaatgcaaaatatgcaaaaagaatgacattataaaaatc
tatcagaataatagatctacttactattgccctttatgccaagattaa
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