KEGG   Dokdonia sp. 4H-3-7-5: Krodi_1004Help
Entry
Krodi_1004        CDS       T01484                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
kdi  Dokdonia sp. 4H-3-7-5
Pathway
kdi03030  DNA replication
kdi03410  Base excision repair
kdi03420  Nucleotide excision repair
kdi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:kdi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Krodi_1004
   03410 Base excision repair
    Krodi_1004
   03420 Nucleotide excision repair
    Krodi_1004
   03430 Mismatch repair
    Krodi_1004
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:kdi03032]
    Krodi_1004
   03400 DNA repair and recombination proteins [BR:kdi03400]
    Krodi_1004
Enzymes [BR:kdi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Krodi_1004
    6.5.1.6  DNA ligase (ATP or NAD+)
     Krodi_1004
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Krodi_1004
DNA replication proteins [BR:kdi03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Krodi_1004
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Krodi_1004
DNA repair and recombination proteins [BR:kdi03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Krodi_1004
   NER (nucleotide excision repair)
    Other NER factors
     Krodi_1004
   MMR (mismatch exicision repair)
    Other MMR factors
     Krodi_1004
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: AEE18988
UniProt: F4AVH1
LinkDB All DBs
Position
1142345..1143970
Genome map
AA seq 541 aa AA seqDB search
MKLFAALIKTLDSTNKTNEKVKALAHYFREASDKDKVWTIAILSHRRPPRPVNTTLLREW
ASELSNIPLWLFEESYHIVGDLAETIALVVPAATASSEKSLTQFLEEMISLKRKTDEEKK
EYLFDNWANLNYYERFVFTKLITGGFRIGVSQKLMTRALSQATDIEEDVLAYKLMGDWKP
QTVTFHDLVIEEDASQEFSRPYPFYLAYAVEDEPSALGDVTDFLAEHKWDGIRSQTIFRN
GEIFIWSRGEELVTDKYPELEILKEHIPDGTVIDGELLPFYDGQIGTFNDLQARIGRKTV
SKKMLKEVPVIIKAYDILEWEGKDLRETAFAKRRTILESLYRNITDKELPIGISETMEFD
SWEAMAQERDRSREMRSEGLMIKRKDSPYRVGRKKGDWWKWKVDPLTIDAVLTYAMRGHG
RRSNLFTDYTFGLWNEDKTELVTFAKAYSGLTDAEFRKVDNWIKKNTLERFGPVRSVTPH
HVFEIAFEGIALSKRHKSGIATRFPRMLRWRHDKQIEDANTLEDLKGMIPSAAKESLPPT
K
NT seq 1626 nt NT seq  +upstreamnt  +downstreamnt
atgaaactatttgcagcactcataaagacactcgattctacaaataagactaacgagaag
gtcaaggcgcttgcgcattacttcagagaagcgtcagataaagacaaggtgtggactatt
gccatcttatcgcaccgtcgccctccaagacccgtaaacaccaccttactcagggaatgg
gcgagcgaactatcaaacatcccgttatggctatttgaagaaagttaccacatcgtgggt
gacctcgcagaaacgattgcacttgtggttcccgcagcaacagcatcttcagagaagtcg
cttactcagtttctggaagagatgatttcgcttaagcgaaaaacggatgaagagaaaaag
gaatacctgtttgataactgggcaaatctcaactattatgaacgttttgtatttacaaaa
ttaattacaggaggctttagaataggtgtgagtcaaaagttgatgacgcgtgcattatca
caagcgacagacatagaagaagatgtgcttgcttataaattaatgggcgactggaaacca
cagacggtcacctttcacgatctggttatcgaagaagatgcaagtcaagaattttcaagg
ccgtatccgttttaccttgcctatgcagttgaagatgaaccttcggcgctgggtgatgta
acagattttcttgccgaacataagtgggatggtatacgctcacaaaccatctttcgtaat
ggggagatttttatctggagtcgcggtgaagagctagtgacagataagtacccagaactt
gagattctcaaagaacatataccagacggaaccgtcatagatggtgagttactacctttt
tatgatgggcagatcggcacatttaacgacttacaagcgcgtataggacgtaaaaccgtg
agcaagaaaatgctcaaagaagtgcctgtaattatcaaggcttatgatattctagaatgg
gaaggaaaagacttgcgtgaaaccgctttcgcgaaaagaaggactatcctcgaatcgtta
tatcgcaatatcacagataaagaactgcctataggcatttctgaaacgatggagtttgat
agttgggaagcaatggcacaagaaagagatcgtagtagagagatgcgctctgaagggtta
atgattaagcgtaaagacagcccctatcgcgtaggtagaaaaaaaggcgactggtggaaa
tggaaagttgatccactcaccattgatgcggtactcacgtatgcaatgcgtggtcacggt
agacgaagtaatttatttacagattacacctttggtttatggaatgaagataaaacagag
cttgttacttttgctaaagcatattcaggcctcacagatgccgagtttagaaaagtagac
aactggattaaaaaaaacacgttagaacgttttggtccagtgagatctgtaacgcctcat
cacgtgtttgagattgcttttgaaggtatagcgttatcaaaaagacataaaagtggtata
gccacgcgtttcccaaggatgctacgctggcgacacgataagcagatagaagatgcaaat
acactagaggatttaaaagggatgattccgagcgcagcaaaggaatctctcccgcccaca
aaataa

DBGET integrated database retrieval system