Kribbella flavida: Kfla_5348
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Entry
Kfla_5348 CDS
T01155
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
kfl
Kribbella flavida
Pathway
kfl03420
Nucleotide excision repair
kfl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Kfla_5348
03430 Mismatch repair
Kfla_5348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kfl03400
]
Kfla_5348
Enzymes [BR:
kfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Kfla_5348
DNA repair and recombination proteins [BR:
kfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Kfla_5348
MMR (mismatch excision repair)
Other MMR factors
Kfla_5348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADB34361
UniProt:
D2PLA6
LinkDB
All DBs
Position
complement(5761918..5765157)
Genome browser
AA seq
1079 aa
AA seq
DB search
MAAKLESTADLVDLLGIPFSDQQLEAITAPLAPGVIVAGAGSGKTTAMAARVVWLICTGQ
VKPEEVLGLTFTKKAANELDVRIREDLTKAGVLGSTLPPDQHPILAAHLRKNVPNWEPEE
PGEPVVSTYHAFAGTLIAEHGLRLGLEPDVRVLADATRYQLAGRVVRRSAGPIRYASHHV
PTLVNSLLSLDGELADHLLRADEIRDHDEAVRQEVAAAPKQTVEVKKLAETALKRGEILQ
LVEEYQAYKAERGVVDFADQMALGARLAEQCPEVPAIERSRYKVVLLDEYQDTSVSQRRM
LTALFAGPDPEHGRGHPVTAVGDPCQAIYGWRGASVANLDEFPEHFRNADGTPARRYVLS
VNRRCGSRILAAANEHATELYEQHPGVIPLEAPDGAPEGAITVGLFETRSQEIEWIADSI
VAAHKTPNRRWKDIGILMRTNVDLSAVHEALIARKVPVEVVGLGGLLALPEVVDVVATLQ
AVNDLTANAAMLRILTGPRYRIGHRDLALLANRSRALADGGDRPAADDLVAALDAAVAGM
DSTEVISLAEAVDDPGPAGWGYSPEALERFQELSTELRELRAHAGEPLLDLVRRVISTIG
LDVELTATPDHVDSGRRDHLAAFLDAVGNFVSTESDGSLDGLLAYLAAEEEYAAGLDLAV
PSEADSVKLLTTHRSKGLEWPVVFVPTLVNKVFPSDRGRDKWTTNAKVLPWPLRGDADTL
PDFHDLSNAGLKAFSDECKQVNSLEERRLGYVAFTRAKEVLIATGHWWGPTQKRPRGPSA
YLEMLKKHAGDRVIAWAPQPELSEENPELAEQTQAAWPAPYDAEAYRRRLEGAALVQQAR
AEGPSAEAEESLLLDEQATVARWDSELERLLSEARESRSRKAYDVELPRTLSATQVMRLA
KDPDGLATELARPMPRKPNRAARFGTRFHAWVESYFGQQFLLDPDDLPGAADEGIVDDTD
LTELMDAFRVGPYGEKAPYEIEAPFALSIGGRVVRGRIDAVYQVVRPDGSRGYDVVDWKT
SRSETADPLQLAIYRVAWAELLGIPLTQVGAAFYYVRTGDIVRPDNLPTKQELVTLLND
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaagctggagagcacggccgacctcgtcgacctgctcggcatcccgttcagc
gaccagcagctggaggcgatcaccgcgccgctggctccgggcgtgatcgtggccggtgcc
ggctcgggcaagaccaccgcgatggccgcccgcgtggtgtggctgatctgcaccggacag
gtcaagcccgaggaggtgctcggtctcaccttcaccaagaaggcggccaacgagctcgac
gtccggatccgcgaggacctgaccaaggccggcgtgctgggctcgaccctgccgcccgac
cagcacccgatcctggccgcgcacctgcgcaagaacgtgccgaactgggagcccgaggag
ccgggcgagccggtcgtctcgacgtaccacgcgttcgcaggcacgctgatcgccgagcac
gggctgcggctcgggctcgagccggacgtccgggtgctcgccgacgcaaccaggtaccag
ctcgccggccgcgtcgtgcgccggtccgccggaccgatccggtacgcgtcgcaccacgtg
ccgaccctggtgaacagcctgctctcgctcgacggcgagctggccgaccacttgctgcgc
gccgacgagatccgcgaccacgacgaggccgtgaggcaggaggtggccgcggccccgaaa
cagaccgtcgaggtgaagaagctcgccgagaccgcgttgaagcggggcgagatcctgcag
ctggtcgaggagtaccaggcgtacaaggccgagcggggcgtcgtcgacttcgcggaccag
atggcgctcggcgcccggctcgcggagcagtgtcccgaggtcccggcgatcgaacgctcg
cggtacaaggtggtcctgctcgacgagtaccaggacacctcggtctcgcagcggcggatg
ctgaccgcgctgttcgccggcccggatcccgagcacggccgcggccacccggtgaccgcg
gtcggtgacccgtgccaggcgatctacggctggcgcggcgcctcggtcgcgaacctggac
gagttccccgagcacttccgcaacgccgacggcacgccggcccggcggtacgtgctgagc
gtcaaccggcgctgcggcagccgcatcctcgccgccgcgaacgagcacgccaccgagctg
tacgagcagcaccccggcgtcatcccgctggaggcgccggacggggcgcccgagggcgcg
atcacggtcgggctgttcgaaacccgttcgcaggagatcgagtggatcgccgactcgatc
gtcgcggcgcacaagacgccgaaccgccggtggaaggacatcggcatcctgatgcggacg
aacgtcgacctgagcgcggtgcacgaggcgctgatcgcgcgcaaggtcccggtcgaggtg
gtcgggctcggcggcctgctggcgctgcccgaggtggtcgacgtggtcgccaccctgcag
gcggtcaacgatctcaccgcgaacgccgcgatgctgcggatcctgaccggcccgcggtac
cggatcggtcaccgcgatctggccctgctggcgaaccggtcccgcgcgctggccgacggc
ggcgaccgcccggccgccgacgacctggtcgccgcgctggacgcggccgtcgccgggatg
gactcgaccgaggtgatctcactggccgaggcggtcgacgacccgggaccggcgggctgg
gggtactcaccggaagcgctggagcggttccaggagctgtcgaccgagctgcgggagctg
cgcgcgcatgcgggggagccgctgctcgacctggtccgccgggtgatcagcacgatcggg
ctcgacgtcgagctgaccgcgacgccggaccacgtcgactccggccgccgggaccacctg
gccgcgtttttggatgctgtcggcaacttcgtgtcgaccgagtcggacgggtcgctggac
gggctgctggcctacctggccgccgaggaggagtacgccgcggggctcgacctcgctgtc
ccgagcgaggcggactcggtgaagctgctcaccacgcaccggtcgaagggcctggagtgg
ccggtggtgttcgtgccgacgctggtgaacaaggtgtttccgtccgaccgcggccgggac
aagtggaccaccaacgcgaaggtgctgccctggccgctgcgcggtgacgcggacacgctg
cccgacttccacgacctgtcgaacgccgggctgaaggcgttcagcgacgagtgcaagcag
gtgaactcgctggaggagcgccggctcggttacgtcgcgttcacccgggccaaggaggtg
ctgatcgcgaccgggcactggtggggaccgacgcagaagcgcccgcgcggcccgtcggcg
tacctggagatgctgaagaagcacgccggggaccgggtgatcgcctgggcgccgcagccc
gagctgagcgaggagaacccggagctcgccgagcagacccaggccgcctggcccgcgccg
tacgacgcggaggcgtaccggcggcggctggaaggagccgcgctggtgcagcaggcccgg
gcggaagggccgtcggcggaggccgaggagtcgctgctgctggacgagcaggcgacggtc
gcgcgctgggactccgagctggagcggttgctgtccgaggcaagggaaagccggagccgc
aaggcgtacgacgtcgagctgccgcgcacgttgtcggcgacgcaggtcatgcggctggcc
aaggacccggacgggctggccaccgagctggcccggccgatgccgcgcaaaccgaaccgg
gcggcgcggttcggcacccggttccacgcctgggtggagagttacttcggccagcagttc
ctgctcgaccccgacgacctgcccggcgccgccgacgagggcatcgtggacgacaccgac
ctgaccgagctgatggacgccttccgggtcggcccgtacggcgagaaggcgccgtacgag
atcgaggcgccgttcgccctgtcgatcggcggccgggtggtccgcggccggatcgacgcc
gtctaccaggtggtccgccccgacggctcccgcggctacgacgtcgtcgactggaaaacc
agccgctccgaaaccgccgacccgctccagctcgccatctaccgcgtcgcctgggccgaa
ctgctcggcatccccctcacccaggtcggcgccgccttctactacgtccgcaccggcgac
atcgtccgccccgacaatctgcccaccaagcaggaactggtcaccctgctgaacgattga
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