Kluyvera intermedia: NCTC12125_03294
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Entry
NCTC12125_03294 CDS
T06042
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
kie
Kluyvera intermedia
Pathway
kie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12125_03294 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kie03019
]
NCTC12125_03294 (rnr)
03016 Transfer RNA biogenesis [BR:
kie03016
]
NCTC12125_03294 (rnr)
Enzymes [BR:
kie01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC12125_03294 (rnr)
Messenger RNA biogenesis [BR:
kie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC12125_03294 (rnr)
Transfer RNA biogenesis [BR:
kie03016
]
Prokaryotic type
tRNA degradation factors
NCTC12125_03294 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
HTH_12
RNase_II_C_S1
OB_Dis3
Tricorn_C1
Rho_RNA_bind
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
VDZ85138
LinkDB
All DBs
Position
1:complement(3028706..3031228)
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AA seq
840 aa
AA seq
DB search
MSKDPFLERETQKYDNPIPSREFILEHLTKREKPANREELAVELNIEGEEQIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGMVIGHRDGFGFLRVEGRKDDLYLSSEQMKMCMH
GDEVLAQPLGADRKGRREGRIVRVLVPRNAQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EAVMGARMGFVVVVELTQRPTRRTKAIGKIVEVLGENMGTGMAVEMALRTHEIPYVWPPA
VEAQVAGLKEQVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDGEARNRGTSVYFPTQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGRLTGFKFYEAVMSSHARLTYTKVWHMLQGDQELREQYAPLVKHIEELHNLYKVLDEA
RAERGGISFESEEAKFIFNADRRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPTTEAITAFRSVLSELGLELPGGNKPEPRDYAELLESVAGRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGHQGNSTETG
GYHYSLEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMQDQVGNVFNGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQIGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERGPRNVGKTEREKAKKGSGGKPSASRRRQAGKRTNFEPDSAFRGEKKGKAKA
NPNSSAKNGKANPNQATEQGKAKPASDKTGAKKAKKPSAKSQKIAAATKAKRAAKKKPTE
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagatcctttcctggaacgtgaaacccagaagtacgacaaccctatcccgagc
cgggaatttatccttgaacacttaacaaaacgcgaaaaaccggcaaatcgtgaagagctg
gccgttgagttgaatattgaaggcgaagagcaaattgaagctctgcgtcgtcgcctgcgc
gccatggagcgcgacgggcagttagtctttacccgccgccagtgctacgcgttgccggaa
cgtcttgacctgcttaaaggcatggttatcggccatcgcgatggctttggcttcctgcgc
gtggaaggtcgtaaagacgacctgtatctgtcgagcgagcagatgaaaatgtgcatgcac
ggcgatgaagtgctggcacagccgctgggcgctgaccgcaaaggtcgtcgcgaagggcgt
attgtccgtgtactggtgccacgcaacgcgcaaattgtcggtcgctacttcaccgacgct
ggcgttggctttgtggtgccggacgatagccgtctgagcttcgacatcctgatcccgcca
gaagcggtgatgggtgcgcgtatgggctttgtggtggtggtcgaactgactcagcgccca
acccgtcgcaccaaagcgattggtaaaatcgttgaagtgctgggcgaaaacatgggtacc
ggcatggccgttgagatggcactgcgtacccatgagattccttatgtctggccgccagcg
gtagaagcgcaggttgccgggttgaaagagcaggtgccggaagaggcaaaagtgggccgc
gttgacctgcgtgatttgccgctggtaactatcgatggcgaagatgcccgcgactttgat
gatgcggtctactgcgagaaaaaacgcggtggcggctggcgtctgtgggttgcgattgct
gacgtcagttattacgtccgtccgccgactccgctggatggcgaagcccgtaatcgcggg
acttccgtgtacttcccaacgcaggttgtcccgatgctgccggaagtgctctctaacggc
ctgtgttccctgaacccgcaggttgaccgtctgtgtatggtctgtgaaatgactatctcg
acgaaagggcgcttaaccggtttcaaattctacgaagcggtgatgagttcgcatgcgcgt
ctgacctacaccaaggtctggcatatgttgcaaggcgaccaggagctgcgtgaacagtat
gcgccgctggttaaacacattgaagagctgcataacctctacaaagtgttggatgaagcg
cgtgctgagcgtggcggcatctcgtttgaaagcgaagaggcgaagtttatcttcaacgcc
gaccgccgcattgaacgaatcgagcagactcagcgtaacgatgcgcacaagctgattgaa
gagtgcatgatcctggccaacatctcggcggcacgtttcgttgagaaagccaaagagcct
gcgctgttccgtattcacgacaaaccaacaaccgaagccattaccgctttccgttcggtg
ctgtcggaattagggctggaactgcctggcggcaacaaaccggagccgcgtgattatgcg
gagctgctggaatctgtcgctggccgtccagatgcggaaatgctgcaaaccatgctgctg
cgctcgatgaagcaggcgatttacgatccggaaaaccgcggtcacttcggcctggcgctg
caatcttatgcgcactttacgtcaccaatccgtcgttatcctgacctctcgctgcaccgc
gccattaagtatctgttggcgaaagagcaggggcaccaaggtaacagcactgaaactggc
ggctaccattactcgctggaagagatgctgcaacttggtcagcactgttcaatggctgaa
cgccgtgccgatgaggccacacgcgacgtttccgactggttgaaatgcgactttatgcag
gatcaggtgggcaacgtctttaatggcgttatcgccagtgtcaccggctttggcttcttc
gttcgtctggatgagttgtttatcgatggcctggtgcacgtttcttcgctggataacgac
tactatcgctttgaccagattggtcagcgtctgattggcgaatccggcggtcagacctat
cgcctcggcgaccgtgttgaagttcgcgttgaagcggtcaacatggacgagcgtaaaatc
gacttctcactgatttccagcgagcgtggcccgcgtaacgtcggtaagaccgaacgcgag
aaagcgaagaaaggcagcggcggtaagccgagcgcgagtcgtcgtcgccaggcgggcaaa
cgcaccaactttgagccggacagcgccttccgcggcgagaagaaaggtaaagcgaaagct
aacccgaattcgtccgcgaagaatggcaaagccaacccgaatcaggcaactgagcaaggt
aaagcgaaaccggcttctgacaaaaccggtgcgaaaaaagccaaaaagccatcggcgaag
tcacagaaaattgctgccgcgactaaagcgaagcgtgctgcaaaaaagaaaccgactgag
taa
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