Kryptolebias marmoratus (mangrove rivulus): 108228584
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Entry
108228584 CDS
T05608
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04010
MAPK signaling pathway
kmr04210
Apoptosis
kmr04218
Cellular senescence
kmr04620
Toll-like receptor signaling pathway
kmr04621
NOD-like receptor signaling pathway
kmr04622
RIG-I-like receptor signaling pathway
kmr04623
Cytosolic DNA-sensing pathway
kmr04625
C-type lectin receptor signaling pathway
kmr04920
Adipocytokine signaling pathway
kmr05132
Salmonella infection
kmr05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108228584 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
108228584 (nfkb1)
04218 Cellular senescence
108228584 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
108228584 (nfkb1)
04621 NOD-like receptor signaling pathway
108228584 (nfkb1)
04622 RIG-I-like receptor signaling pathway
108228584 (nfkb1)
04623 Cytosolic DNA-sensing pathway
108228584 (nfkb1)
04625 C-type lectin receptor signaling pathway
108228584 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
108228584 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108228584 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
108228584 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
kmr03000
]
108228584 (nfkb1)
Transcription factors [BR:
kmr03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
108228584 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Motif
Other DBs
NCBI-GeneID:
108228584
NCBI-ProteinID:
XP_017259654
LinkDB
All DBs
Position
Unknown
AA seq
500 aa
AA seq
DB search
MAGDDHYLHPSTQMFDNIMMDPSWEFSHFAAMPQTTSLRTVDGPFLQIVEQPKQRGFRFR
YGCEGPSHGGLPGASSEKNKKTYPTVKISNYQGQARVVVQLVTALTSAPQLHAHSLVGKQ
CDKGICIADLQSKDSSISFPNLGILHVTKKNVVKILEERMIEALRMGYNSGLSIHPEIDA
LQGEVRIPRELSDHQRSIISIAAANQAKDMDLSVVRLMFTAFLPDSDGGFSRRLEPVVSE
PIYDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEEDDTGLTWEAL
GDFSPTDVHRQFAIVFKTPKYRDQNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQIIDKE
EVQRKRQKTLPNFQDFSGHGGGGGGGGGGGGGGLYRGGGPATGGGPGSGGGYYQGLTSYN
YGGGGGGGGFSTGYSAALGGGGGGIKHASNSDAADDGDGSDPDDDPTLGVVLRASAQPGG
LEVGERAEEGGGGVEPEPDR
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atggccggagacgaccactacctgcatccttccacacagatgtttgacaacataatgatg
gatccttcctgggagttttctcattttgccgccatgcctcagacgacgtctctgcggaca
gtggacggaccgttcctgcagattgtggagcagcccaaacagcgtggcttcaggttcagg
tacggctgcgaggggccgtctcacggcggcctgccgggagcctccagtgagaagaacaag
aagacctaccccaccgtgaagatctctaactaccagggtcaggcccgggtggtggtccag
ctggtgacggcgctgacctccgcccctcagctccacgctcacagcctggtgggaaaacag
tgcgataaaggcatctgcatcgctgacctgcagtccaaagactccagcatcagttttccc
aacctggggatcctccatgtgacgaagaagaacgtggtgaagattctggaggagaggatg
attgaagccctcaggatgggatacaacagcggcctctccatccacccagagatcgacgcc
ctgcagggggaggtccggatcccgcgggaactctccgaccaccaacgcagcatcatcagc
atcgcagcagccaatcaggccaaagacatggacctgagcgtggtccgcctcatgttcacg
gcgttcctccccgacagcgacggaggcttctccaggcggctcgagcccgtggtttctgag
cccatctacgacagcaaggctccgaacgcctccaacctgaagattgtgaggatggatcgg
accgctggctgcgtgaccggaggagaggaggtctacctgctgtgtgacaaagtccagaaa
gatgatattcaggtgcggttttacgaggaggatgatacggggttgacctgggaagctctg
ggagatttctcccccacagacgtccacagacagttcgccatcgtcttcaagactcccaag
tatcgagaccagaacctgcagaagccgacgtccgtgttcgttcagctgaagaggaagtct
gacaatgagaccagcgagcccaaacccttcacctaccatcctcagatcatagataaggag
gaggtgcagaggaaacgtcagaagacattaccaaacttccaggattttagtggtcacgga
ggaggaggaggaggtggaggaggaggaggaggaggaggactgtaccgaggtggaggtcct
gctacaggaggaggtcctggatcaggaggaggatattatcagggcctcacatcctacaac
tatggaggaggaggaggaggaggaggcttttccacagggtactcagctgctctgggagga
ggaggaggaggcatcaagcacgcctccaacagcgacgctgcggacgacggtgacggcagc
gatccagacgacgacccaacgttgggggtcgtcctgcgagcttcagcccagccgggaggc
ctggaggtgggggagagggccgaggagggagggggcggtgtggagcctgaaccagacaga
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