Kryptolebias marmoratus (mangrove rivulus): 108231192
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Entry
108231192 CDS
T05608
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
3.6.4.13
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108231192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
kmr03041
]
108231192
03009 Ribosome biogenesis [BR:
kmr03009
]
108231192
Spliceosome [BR:
kmr03041
]
Complex A
U2 snRNP components
U2 related factors
108231192
Complex B
108231192
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
108231192
Ribosome biogenesis [BR:
kmr03009
]
Eukaryotic type
90S particles
Helicases
108231192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
AAA_25
Flavi_DEAD
nSTAND3
Atrophin-1
AAA_29
AAA_7
T2SSE
Motif
Other DBs
NCBI-GeneID:
108231192
NCBI-ProteinID:
XP_017263594
UniProt:
A0A3Q2Z9P8
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All DBs
Position
LG3:11223450..11235789
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AA seq
762 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSDGRDRDRDRDREGLSRDRDRDRDRDRDRDRERDSKPSATP
SNSTTPVMGLPPLKQMAIQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKESFNDIITRH
QSFVLVGETGSGKTTQIPQWCVDMVRALPGPKRAVACTQPRRVAAMSVAQRVADEMDVML
GQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILM
GVLKEVVRQRPDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLE
AAIRTVIQIHMCEEDEGDCLLFLTGQEEIDEACKRIKREVDDLGTEVGDIKIIPLYSTLP
PQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV
ESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQ
LKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAK
MVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHA
FKQNHESNQWCYDNFVNYRSLMSADNVRQQLSRIMDRFSLPRRSTEFTSRDYYINIRRAL
CTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDI
KPEWLVKIAAQYYDMSNFPQCEAKRQLERIVAKLESKEYSQY
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacaccgtttggatttgggtgatgactattcctctagtaagaagagatct
gatgggagagacagggaccgtgacagagaccgtgagggtctttccagggaccgggatcga
gacagagaccgagacagggacagagaccgggaaagggactcgaaaccttctgccactccc
tctaacagcacaacacctgtgatgggcttacctcctctcaagcagatggcgattcagcag
cagatcaaccctttcaccaacctgccacacacgccgcgctactacgagatcctgaagaag
aggttacagctcccggtgtgggagtacaaagagagctttaatgatatcattacacgtcat
cagagcttcgtccttgtgggagagacgggctctgggaagactacacagatcccacagtgg
tgcgtggacatggtgagggccctgcctggtccaaagcgggcagtagcttgtactcagccg
aggagggtggctgctatgagtgtggctcaaagggtggcagatgaaatggatgtcatgctt
ggacaggaagttggctactccatccgatttgaggactgtagttctgctaagactatacta
aagtacatgacagacggtatgttattgagagaggctatgaatgatcctctgctggaacga
tacggtgtaatcattctggacgaggctcacgagcgaactcttgctacagatatcttgatg
ggcgtgctaaaagaagtggtccgtcaaagaccagatttgaaggtgattgtcatgagtgcc
acactggatgctgggaagttccaggtgtactttgataactgccctctgctgactattcct
gggcgcacacatcctgtagaaatcttttacacccctgagccagagcgggactaccttgag
gcagcaattcgcaccgtcatccagattcatatgtgtgaggaggacgagggagactgcctt
ttgttcctcacgggccaggaggaaattgatgaggcctgcaagcgaatcaagcgtgaggtc
gatgacctcggtaccgaagtcggagacatcaaaatcattccactgtattccacactgccc
ccacagcagcagcagaggatctttgagccgccacctccgaggaagccaaacggtgcaata
gggagaaaggtcgtcgtttctacaaatatcgctgagacttctctaacaatcgatggtgtc
gtgtttgtcattgatcctgggtttgccaaacagaaggtatacaatcctcgtatcagagtg
gagtctttgctggtcacggccatcagtaaagcttctgcccagcagagggcaggtcgagcc
ggcagaacacgtccagggaaatgtttccgcctctacacagagaaagcgtataaaacagag
atgcaggataacacttatcctgagatcctgcggtccaacttgggatctgttgtgctgcag
ctgaaaaagctgggtatcgacgatcttgtccactttgacttcatggatccaccggctccc
gagacgctgatgagagccctcgagctgctgaattatctggcagctctcaacgatgacggt
gacctgacggagctgggctccatgatggcagagtttcctctggaccctcagctggcgaag
atggtcattgcgagctgcgagtttaactgctccaatgagatcctctccatcactgccatg
ctgtcagtcccacagtgttttgttcggcccacggaggctaagaaggcagcagatgagtcc
aagatgaggttcgctcacattgacggagaccacttgacgctgctcaacgtctaccatgcc
ttcaaacaaaaccacgagtctaaccagtggtgctatgacaactttgtcaactaccgttcc
ctgatgtctgctgacaacgtgcgtcagcagctgtccaggatcatggaccgcttcagcttg
cctcggcgaagcacagagttcaccagcagagattactacatcaacatccgccgggcgctc
tgcaccggcttcttcatgcaggttgctcatttggagcgcacaggccattacctcaccgtc
aaagacaaccaagtggtccagctgcacccatctaccgtcctggaccacaagcctgagtgg
gtgctctacaatgagtttgtcctcaccaccaagaactacatccgcacttgcacagacatc
aagccagagtggctggtgaagatcgcagcccagtactatgacatgagtaactttccacaa
tgtgaagctaaacgacagctggagcgaattgttgccaagctggagagcaaagagtattct
cagtactaa
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