Kryptolebias marmoratus (mangrove rivulus): 108233539
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Entry
108233539 CDS
T05608
Symbol
col27a1b
Name
(RefSeq) collagen alpha-1(XXVII) chain B isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108233539 (col27a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
kmr00536
]
108233539 (col27a1b)
Glycosaminoglycan binding proteins [BR:
kmr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108233539 (col27a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
GH131_N
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
108233539
NCBI-ProteinID:
XP_017267567
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All DBs
Position
LG1:26955892..27018316
Genome browser
AA seq
1686 aa
AA seq
DB search
MEPDNAPNSEPKTTGVGGRSLILWTILFCSCSLRLAQAQDVDILKHLGLFGRRTGGSAQS
ILNGVIPFKSGVILTPRARIQVPLRTVIPATFNTTSLSLILSLSVHRFNSAFLFSVLSKK
RKVQLGLQFIPGKVLVHVAHKSYVSFDYDVYDGQWHNFALDIQTHQVFLHTSCGKRSLYV
DLSSKKETVLDSDGSFLLGKMNHNSVPFEGAICQFDIYPSAKAAHNYCDHIKKHCREADT
YRPVFSPMLPLFSDPNISFTHVNSLPLTERPKRAEMTTLTRTTIPLPADHLLLNKTADYQ
TVSSTKPGAVSASPPVHPGLGSPFRLLTQTVTAPLWISRSTPNPKLKSHTRKYTKQRNSA
ETSGKPILSPVSTKPSEMKTTFWTKTAPTQGSPSNTYSPHEKEFTTVTLRKPEPKVTSVQ
DFKPAIAVTPASTDGLQTFDLEPTQFSLFAGPPGLKGEPGPPGPQGFPGLPGKPGKRGPR
GPPGPYGNPGHPGPPGMKGQKGDPGLSPGQALKGQKGEHGIMGSPGLPGQDGRKGQKGYP
GPSGLPGEAGERGDDGSPGAKGYPGRQGLPGPVGRKGSKGIRGHIGIPGLFGFPGPDGER
GFPGVHGKKGKMGRPGFPGDFGERGPPGPDGNPGELGAPGLCGVNGLIGNMGPVGIMGLP
GPPGLKGVPGNPGEPGLKGDKGDVGLPGEQGECGFKGDKGNRGSPGLPGPRGKHGSQGKP
GEKGPDGKRGPLGPEGFPGDIGPPGQNGPEGPKGIEGTRGLPGPAGKPGPQGDPGPVGPA
GPAGAEGRPGRQGFPGPTGPDGPKGELGITGEVGKLGEKGLLGFIGPVGELGIAGEKGDR
GKMGVPGPPGEPGPMGHTGMPGEAGPPGPQGIPGPLGSQGSAGIRGPKGRRGPRGPDGPM
GELGTTGVKGSDGPPGKLGLPGEVGRLGEPGEAGSKGFPGVQGPSGLPGAKGFAGEPGPA
GPAGGTGPLGAMGPMGPPGKAGERGPPGEPGEKGSVGPPGTIGEQGLIGQRGETGMDGEV
GPSGPNGVKGEKGDPGPEGNPGDRGEIGLKGKEGPPGPPGLVGVRGQEGKPGKIGESGKP
GEKGSKGQQGHLGETGPIGEPGEPGFVGQKGARGTIGPVGAPGTMGQQSDPGTAGYEGHM
GRTGPAGPPGQKGEKGEQGDDSKVEGPPGPQGDRGPPGERGERGEPGDPGHVGITGINGL
RGEAGAPGFPGHPGPKGQPGLKGPKGDQGLKGKSGSTGSSGTKGPPGPEGPSGPRGVQGR
EGLEGPPGMDGSPAKDGSKGVKGEQGEDGELGLNGKPGQQGAKGVTGLQGSQGSIGPKGE
RGLPGQTGPAGKRGSVGVMGLPGKQGDPGAKGQPGDGGEQGFPGVLGLFGPKGPPGDTGP
AGIQGPKGPRGLMGVEGALGPIGIIGPNGHPGPQGDKGSRGETGLQGPRGSPGPQGPPGP
PGLPSSAFLLKNEALGAALEFLIDSHAALKQENFPSTDLPMLDQGTEVLKTLQHLSTLVQ
SLRNPLGTRDNPARICRDLYNCEQRLHDGSYWVDPNLGCSTDSIEVTCNFTAGGQTCLKP
ITVSKLEVGVGRIQMNFIHLLSTEAVQHIIIHCLNASVWAAGPSEQPSSKAVSFKAWSGE
KIQPGDLLEPLIPRDDCWIKDGRWHQTHFIFQSQDPNLLPIVVVHDLPTTEPGARFHLEV
GPVCFL
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atggagccggacaatgccccgaactccgaacccaaaaccactggagtcggggggagatct
ctaattctttggactatattgttctgcagctgctctttgagactggcacaagcgcaagat
gtggatatcctgaagcatcttgggctctttgggcgaaggacaggcgggtccgctcaatcc
attcttaatggcgtcatccccttcaagtctggcgtcatccttactccaagggcccgcatc
caggtgcccctgcgcactgtgatccctgccaccttcaacaccaccagcctctccctgatt
ctcagcctgtctgttcatcgcttcaacagcgcctttcttttctcagttctgtctaaaaaa
aggaaagtgcagctcggattgcagttcataccaggaaaggtacttgtacatgttgcgcat
aaaagctatgtgagttttgactatgatgtctatgatggccagtggcacaattttgctttg
gatattcaaacccaccaagtattcttgcacacatcttgcggtaagagaagtctgtatgtg
gatttatcctctaaaaaagagactgtattggattcagatggctccttcctgctgggcaaa
atgaaccacaattcggtgccatttgaaggcgccatttgtcagtttgacatttatccctct
gctaaggcagctcataactattgtgatcatattaagaaacactgcagagaagcagacacc
tatcggcctgtgttttctcccatgctacctcttttttcagacccaaatatttctttcact
cacgtaaattcactgccgttgacagaaagacccaaaagggcagagatgactactttgact
aggactacaattcctcttccagctgaccacttgttgctgaacaaaacagctgattatcag
actgtaagctctacaaaacctggtgctgtttctgcttctcccccagttcatccaggactg
ggaagtcctttcagacttttaactcagactgttactgcaccactttggattagcaggagt
acaccaaatccaaaattaaaatcgcacaccagaaagtacacaaagcagaggaactccgca
gaaacttctggaaaacctatactttcacccgtttccaccaaaccatcagagatgaaaaca
accttctggaccaagactgctcccacacaggggtctccttcgaacacctacagtccacat
gaaaaggagtttaccacagtaactctaaggaaacctgagccaaaagtgaccagcgtgcag
gatttcaaaccagccattgcagtcactccagcttcaacagatggtctgcaaacatttgac
ctggagccgacccagttctcactgtttgctggaccacctggactaaaaggagaaccagga
ccgccgggccctcaaggatttccaggcttgccaggaaaaccaggcaagaggggcccaagg
ggtcctcctggtccttatggaaatcctggtcatcctggacctcctggaatgaagggacaa
aaaggagatcctggactgtcccctggtcaagccctaaaaggacaaaaaggagaacatggc
attatgggctccccaggactgcctggccaagatggacgaaagggacaaaaaggctatcct
ggtccttctggtctcccaggtgaagctggtgaacggggagatgatggaagccctggggcc
aaaggctatcctggcaggcagggtttacctgggcctgtaggaagaaaggggtcaaaagga
attaggggtcacattggcatcccagggctttttggctttcctggtcctgacggagagaga
ggatttcctggtgtacatgggaagaaggggaagatgggtaggccgggctttcctggtgac
tttggtgagagaggacctcctggccctgatgggaacccaggggagctgggagctcctggt
ctgtgtggagtcaatggtcttattggaaacatggggcctgtcggcatcatgggcttacca
ggacctccaggactcaagggagtacctggaaatccaggggaaccaggactgaaaggtgat
aagggtgatgttggcttaccaggagagcagggggagtgtggattcaaaggggacaagggc
aaccgtggctcacctgggttgccaggtcctcgtggaaaacatggatcacagggtaaacct
ggtgaaaagggtcctgatggtaaacgtggtcctcttggcccagaaggcttcccgggtgac
attggcccaccaggacaaaatggccctgagggaccgaagggaatagaagggacaagaggt
ttgccaggtccggcaggaaaacctggccctcagggtgatccgggaccagttgggccagca
ggacccgccggagccgagggcaggcctgggaggcaaggattccctggaccgacaggccca
gacggacccaagggtgagctggggataactggcgaggtcgggaagcttggcgagaaggga
ctgctgggttttatcgggcccgttggagagttgggtatcgcaggagaaaagggggatcga
ggtaaaatgggtgtccccgggcctccaggtgaaccaggtccgatgggtcacactggaatg
cctggagaggcaggaccacctggaccacaggggatcccagggcctcttggttcacaaggt
tctgctggcattagaggacccaaaggcaggaggggtccacgaggccctgatggtcccatg
ggggagctggggactacaggggtcaagggttctgatggtccaccaggaaaattgggtctc
cctggggaggtgggaagacttggtgagccgggtgaagctgggtcaaagggatttccaggt
gttcaggggccctcaggacttccaggagccaaaggatttgctggagaaccaggaccagca
ggtccagcaggagggactgggccactgggggcaatggggccgatggggccccctggtaaa
gctggagagagaggaccgcctggtgaacctggagagaagggttctgttggtccacctggc
accatcggggagcagggtttgattggccagagaggtgagacgggcatggatggagaggtt
ggaccaagtggacctaatggagtaaagggtgagaagggagatcctggcccagagggcaac
cctggagacagaggtgaaattggcctgaaaggaaaggaaggtccacctggcccacctggt
cttgtgggggtgaggggtcaggagggcaaacctggcaaaattggggaaagcggaaagcca
ggggagaaggggagcaaaggtcagcaaggccatttgggtgagactggtccaattggtgag
ccgggggagccgggatttgttgggcagaaaggagcgagaggaaccattgggccggtgggt
gctccagggacaatgggccaacaaagtgatccgggcacagcaggttatgagggccacatg
ggacgaacaggcccagctggacctcctggacaaaaaggtgaaaagggagaacagggagat
gacagcaaggtagagggccctccaggtccccaaggtgacagaggtcctcctggagagaga
ggagaaagaggagagccaggtgacccaggacatgttggtataacaggcataaatggactg
aggggtgaagctggtgctccaggttttcctggacatcctgggcctaaaggacaaccagga
ctaaaaggaccaaaaggtgatcaaggtttgaaaggaaaatcagggtcaacgggttcatct
ggaaccaaaggaccaccaggtccagagggcccttctggtccacgtggggtccagggcagg
gaaggacttgagggcccgcctggaatggacggctcacctgccaaagatggaagtaaagga
gtcaaaggagagcaaggagaagatggagaactgggtttaaatggaaaacctgggcagcag
ggtgcaaagggtgtgacaggacttcaaggaagtcaaggctccatcggtccaaagggtgag
agaggactgccaggccagactggtccagcgggaaagagaggctctgttggcgtgatggga
ttgcctgggaaacaaggagatccaggagctaaagggcaaccaggggatggtggtgaacag
ggttttccaggggtcttgggcttgtttggaccaaagggtcccccaggagacactggccca
gcaggaatccagggaccaaaaggaccacgaggactgatgggtgtggaaggagctctgggc
cccatcggcatcattgggcccaacggtcatccaggaccccagggtgacaaaggaagtcga
ggagagacggggttgcaaggaccaagaggatctcctggacctcaaggaccacctggacca
ccagggcttcccagttctgcatttttactgaagaatgaagctcttggtgctgctcttgaa
ttcctcattgattcacatgctgctctcaaacaagagaattttccaagcacggacttgccc
atgttagaccagggcacagaggtcctaaagaccctccagcatctcagcacgcttgtccaa
agtctgaggaacccgctgggaactcgagacaatcccgcccgaatctgcagagacctgtac
aactgtgagcagcgactgcacgacggttcatattgggttgatccaaacctcggctgcagc
actgacagcattgaggtgacatgcaacttcactgctggaggacagacttgccttaaacct
atcacagtctccaagttggaggtaggagtgggtcgcatccagatgaacttcatccacctg
ttgagcactgaggccgtgcagcacatcatcattcactgtctgaatgcatctgtgtgggca
gcagggccctctgagcagccttcatccaaggctgtgagcttcaaggcctggtcaggggag
aagattcagccgggagacctgctggagcctctcatacccagggacgactgctggatcaaa
gatggacgctggcatcagacgcacttcatctttcaaagtcaggacccaaacttgcttcct
atagtggtcgtgcatgacttgccgaccacggaacccggcgcacggtttcacctggaggtt
ggccccgtgtgcttcctgtaa
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integrated database retrieval system
