Kryptolebias marmoratus (mangrove rivulus): 108248493
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Entry
108248493 CDS
T05608
Symbol
lig4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
108248493 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kmr03400
]
108248493 (lig4)
Enzymes [BR:
kmr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
108248493 (lig4)
DNA repair and recombination proteins [BR:
kmr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
108248493 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
108248493
NCBI-ProteinID:
XP_017292784
UniProt:
A0A3Q2ZT85
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All DBs
Position
LG23:complement(12546204..12553303)
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AA seq
922 aa
AA seq
DB search
MFPLSFNKQSDFIMEGTSKSDAAGGPTVADRVPFFHLCTTLEKIQRSKLRPEKSKILRDF
LESWRKFHSALHKDDPKTTDSFYPAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKN
GPEAGRLLNYRAPTTSQGEAGDFASMAYFVLKKRCSSQGGLSVKEVNDFLDSVAINNANK
QKDQVKKSLLHLITQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAADLYNVNTDLK
KVCQQLHSPSVSLSEVSIELFSAFKPMLAAVADIRGVEKQMGGGAFYVETKLDGERIQLH
KDGDVYKYFSRNAFEYTQQFGSSPREGSLTPHVHGAFKGHVVSCILDGEMMAYDPAAETF
MQKGSKFDIKRLMDDSELQTCFCVFDVLLVNNQKLGKEPLKKRYETLQTVFSPVKGRLHL
VPKTEVRTMQQVVGALNDAIDNREEGIMVKDPLSLYKPDKRGEGWLKIKPEYVDGLMDEL
DLLIVGGYWGKGRRGGMMSHFLCAVAEAPKPGEKPSVFHSLCRIGSGYTMKELYDLGLKL
AKHWKVYRKNDPPASILCGTEKPEVYIEPSDSVIIQVKAAEIVGSDMYKANCTLRFPRIE
RIRDDKEWHQCMTLAELEQFRGRASGKLASRHVRVNGDEPQGKKRKLPAKPKKVIGIVDH
FKPQDLSGVSKETDMFEDVEFCVLNGTADHPKSELEKGVARCCGIVVQNPGPDTYCVIAG
VENMRVKNLISSNQHDVVWASWLLECLDQREVVPWQPRHMIHMSPSTREHFAKEYDAYGD
SYFVDTDERQLREVFGRIGGAEAEAVNAAQVEERYGWDDLPTSMFRPFTVYADVFADIGD
PTSVVPASCLNLRALEVRYHGGTVARTLEEGVSHVIVEEETRLLDLRALRHRFRKKFKIV
RDSWVTDSIKAGYLLDDSDYLL
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgttcccgctcagttttaataaacaatcagatttcatcatggagggaacttccaaaagc
gacgccgcaggtgggccgaccgttgctgatcgcgtccctttcttccacctgtgcaccact
ttagagaaaatccagaggtccaagctgcgtcctgagaaatccaagatcctcagggatttc
ctggagtcgtggcggaagtttcactccgccctccacaaagacgaccccaaaaccacggac
tccttctaccccgccatgcgcctcatcgtccccccgttcgaacgagagcgaatggcgtac
ggcatcaaggaaagcatgctcgccaaactctacatcgacgtcctaggcctccccaagaac
ggtcccgaggccggcaggctgctaaactaccgcgcgccgaccacgtcccaaggagaggcc
ggggacttcgccagcatggcgtactttgtgctgaagaaacgctgctcgagccagggaggc
ctcagcgtcaaagaggtcaacgacttcctggactcggtggcgatcaacaatgccaacaag
cagaaggatcaagtgaaaaagagcctgctgcacctcatcacccagagctccgccctggag
caaaagtggctcatccgaatgatcctgaaggacatgaagctcggcatcagcaaggagacc
gtcctgcaggtcttccacccggacgccgccgacctctacaacgtcaacacggacttgaag
aaggtctgccagcagctccacagcccttccgtgtccctcagcgaagtctccatcgagctc
ttctcggccttcaagccgatgctggcggcggtggccgacatccgcggcgtggagaagcag
atgggcggcggcgccttttacgtggagacgaagctggacggcgagcggatccagctgcac
aaggacggcgacgtgtacaagtacttcagccggaacgccttcgagtacacgcagcagttc
ggcagctcgccgcgggagggatcgctgacgccgcacgttcacggcgccttcaagggccac
gtcgtcagctgcatcctggacggcgagatgatggcgtacgacccggcggcggagacgttc
atgcagaaggggagcaagtttgacatcaagaggctaatggacgactcggagctgcagacg
tgcttctgtgtgtttgacgtcctgttggtgaacaaccaaaagctcggcaaagagccgctg
aagaagcggtacgagacgctccagaccgtcttctcgccagttaaggggcggttgcacctg
gtgccgaagaccgaagtcaggaccatgcagcaggtggtcggtgcgcttaatgatgccatc
gacaacagggaggaggggatcatggtgaaggatcctctctccttatacaaaccggacaaa
cggggggagggctggctgaagataaagccagaatatgtggatggcttgatggatgagctc
gatctgctgatcgtcggcggctactgggggaaagggaggcggggcgggatgatgtcccat
ttcttgtgtgcggtcgccgaagcaccaaagcccggcgagaaaccgtcggtattccactcc
ctctgccgcatcggctcggggtacaccatgaaagaactgtacgacctgggtttgaagctc
gccaagcactggaaggtctaccggaaaaacgacccgccggcgtccatcctgtgcggtaca
gagaagccggaggtctacatcgaacccagcgactccgtcatcatccaggtcaaggcggcg
gagatcgtcgggagcgacatgtacaaggccaactgtacgctgcgcttcccacggatcgag
aggatccgcgacgacaaggagtggcaccagtgcatgacgctcgccgagctggagcagttc
cgtggccgagcatccgggaagctggcctcgcggcacgtccgcgtcaacggtgacgagccg
caggggaagaagaggaagctgcccgccaagcccaagaaggtgatcggcatcgtcgaccac
tttaagccccaggacctgtccggcgtctccaaggagaccgacatgttcgaggacgtggag
ttctgtgtcctgaacggcacagcggaccaccccaagtcggagctggaaaaaggcgtggcc
aggtgttgcggcattgtggtccagaatcccggtccagacacttactgcgtgattgctggc
gtggagaacatgcgtgtgaagaacctgatctcgtccaatcagcacgatgtggtctgggcc
tcctggctgctggagtgcctggaccagagggaggtggtgccgtggcaacctcgccacatg
atccacatgtcgccgtccaccagggagcacttcgccaaggagtacgacgcctacggcgac
agctacttcgtggacacagacgagcggcagctgcgcgaggtcttcggccgaatcggcggc
gccgaggcggaggcggtgaacgcggcgcaggtggaggagcgttacggctgggatgacctc
cccacgagcatgttcagacccttcacggtctacgcggatgtctttgccgacatcggcgat
ccgacaagcgtcgtgcccgcgtcctgcctgaacctccgggcgctggaggtccgctaccac
ggggggacggtggcgaggacattggaggaaggggtttcgcacgtgatcgtcgaggaggag
acgaggctcctggacctgagagccctgcggcaccgctttcggaagaagtttaagattgtc
cgtgactcctgggtcaccgattcgatcaaagctgggtatctgttggacgatagtgactac
ttgctgtga
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