Kosakonia sp. CCTCC M2018092: EH164_13680
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Entry
EH164_13680 CDS
T05734
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kot
Kosakonia sp. CCTCC M2018092
Pathway
kot03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EH164_13680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kot03400
]
EH164_13680
Enzymes [BR:
kot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EH164_13680
DNA repair and recombination proteins [BR:
kot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EH164_13680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AZI88048
LinkDB
All DBs
Position
2859670..2863116
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYSLPSKAGDQRQFGELTGAACATEVAEIIERHAGPVVLIAPDMQNALRLHDEIS
QFTDNLVMNLADWETLPYDSFSPHQEIVSSRLSTLYQLPAMQRGVLIVSVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDQLRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSSQPY
RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKTAIELFRSQWRDKFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLEASAERFQQDAQ
ARYENRGVDPMRPLLPPEALWLRVDALFSELKKWPRIQLKTEQVADKAGQINLGYQSLPD
LSVQAQQKSPLDNLRKFLESFSGPVVFSVESEGRREALLELLARIKVAPKRALRLDDASA
PGAWLMIGAAERGFIDTLRNRALICEGDLLGERVARRRQDTRRTINPDTLIRNLAELHDG
QPVVHFEHGVGRYAGMTTLEAGGITAEYLMLTYANDAKLYVPVSSLHLISRYAGGAEDNA
PLHKLGSDAWTRARQKAAEKVRDVAAELLDIYAQRAAKSGFAFKHDREQYQLFCDGFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAIENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQAAEGKIDILIGTHKLLQSDVKM
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMETIGFSLYMELLENAVDALKEGREPSLEDLTSQQTEVELRMPALLPDDFIPDV
NTRLSFYKRIASAKDENALEEIKVELIDRFGLLPDAARNLLDIAMLRQQAQKLGIRKLEG
NDKGGLIEFNEKNHVNPAWLIGLLQKQPQHFRLDGPTRLKFFQELSERKTRMEWVRNFMQ
QLAENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaataccgttattccctgccgtcaaaagcgggtgaccagcgccagtttggc
gagcttaccggcgcggcctgcgccaccgaagtggcagaaatcattgaacgacacgccggt
ccggttgtgcttatcgccccggatatgcagaacgcgctgcgtttacatgatgagattagc
cagtttaccgacaacctggtgatgaacctcgcggactgggaaacgctgccctacgacagc
ttttcgccgcaccaggagattgtctcctcccgtctctccaccctttaccagctgcctgcg
atgcagcgcggcgtgctgattgtctcagtcaatacgctgatgcagcgcgtctgcccgcac
agctatctgcacggtcacgcgctggtgatgaaaaaggggcaacgtctgtcacgggatcag
ctgcgtacgcagcttgatagcgccggttaccgccatgtcgatcaggtgatggagcacggc
gaatatgccactcgcggcgcgctgctcgacctcttcccgatgggcagcagccagccttac
cgcctcgactttttcgatgatgagatcgacagcctgcgtctgtttgatgccgatacccag
cgcacgctcgaagaggtggaggcgattaacctgcttccggcccatgagtttccgaccgat
aagaccgccatcgagcttttccgcagccagtggcgcgataagttcgaggtgaagcgtgac
gcggagcatatctatcagcaggtgagcaaaggcaccctgcccgccgggatcgaatactgg
cagccgctctttttcagcgaaccgctgccgccgctgttcagctacttcccggcgaatacg
ctgctggtgaataccggcgatctggaagccagcgccgagcgtttccagcaagatgcgcag
gcacgctatgagaaccgcggcgttgatccgatgcgcccgctgctgccgcccgaggcgctg
tggctgcgggttgatgcgctgttcagcgaactgaaaaaatggccgcgcattcaactcaaa
accgagcaggtggcggataaagcgggccagattaacctcggttaccagagcctgccggat
ctctcagtacaggcgcagcagaaatcgccgctggataacctgcgcaaattccttgagtcc
ttcagcggcccggtggtcttttccgtcgagagcgaggggcgtcgcgaagcgctgctcgaa
ctgctggcgcgcatcaaagttgcgccaaagcgcgctctgcgtctggatgatgccagcgcg
ccgggcgcgtggctgatgatcggtgccgccgagcgcgggtttattgatacgctgcgtaac
cgggcgctgatttgcgaaggcgatctgctgggcgagcgcgttgcgcgccgccgccaggat
acgcgccgcaccatcaacccggatacgctgatccgcaacctggcggagctgcatgacggc
cagccggtggtgcactttgagcacggcgttggtcgctatgccgggatgacgacgctggaa
gcgggcggcatcaccgcagagtacctgatgctgacctatgccaacgacgccaaactctat
gtcccggtctcgtcgctccatctcatcagccgctatgccggtggcgcggaggataacgcc
ccgctgcataaactgggcagcgatgcctggacgcgcgcgcggcaaaaagcggcggagaag
gtgcgcgacgtggcggcggaactgctggatatttacgcccagcgcgcggcgaagtcgggc
ttcgcgtttaaacacgatcgcgaacaataccagctcttttgcgacggtttccccttcgaa
accaccccggatcaggcccaggccattaatgccgtgctgagcgatatgtgccagccatta
gcgatggatcggctggtgtgcggcgatgttggcttcggtaaaaccgaagtggcgatgcgc
gccgccttccttgctatcgagaacaataagcaggtggcagtgctggtgccgaccaccctg
ctcgcccagcagcacttcgataatttccgcgaccgctttgccaactggccggtgcgcatc
gagatgctgtcgcgttttcgcagcgccaaagagcaggcgcagatccttgagcaggccgcc
gaagggaagatcgatattctgatcggcacgcataaactgctgcaaagcgatgtgaaaatg
aaggatttggggctgctgatcgtcgatgaggagcaccgtttcggcgtgcggcataaagag
cgcattaaagcgatgcgcgccgatgttgatatcctgacgctcaccgcaacgccgatcccg
cgcacgctgaatatggcgatgagcggcatgcgcgatctgtcgattattgcgacacctccc
gcgcgccgtctggcggtgaaaacctttgttcgcgaatatgacaacctggtggtgcgcgag
gcgatcctgcgtgaggtgctgcgcggcggccaggtttactacctctataacgatgtagag
aacatccagaaagcggccgaccggctggcggagctggtgccggaagcgcgtatcgccatt
ggtcacggccagatgcgcgagcgcgagctggagcgggtgatgaatgatttccaccatcaa
cggtttaacgtgctggtttgcaccaccattatcgaaaccgggatcgatattccgaccgcc
aataccatcatcattgagcgcgccgaccactttggccttgcacagttgcaccagctgcgc
ggtcgcgttggacgttcgcatcaccaggcctatgcctggctgctgacgccacatccgaag
gcgatgactaccgatgcgcaaaaacgtctcgaagcgattgcgtcgctggaggatctgggc
gctggctttgcgctggcgactcacgatctggagatccgtggcgcgggcgaactgctcggt
gaggatcagagcgggcagatggagaccatcggtttctcgctctatatggagctgctggag
aatgccgtcgatgccctgaaagagggtcgcgagccgtcgctggaggatctgaccagccag
caaacggaggtggagctgcgcatgcctgccctgctgccggatgatttcattcctgatgtg
aatacgcgcctgtcgttctataagcgcatcgccagcgcgaaagatgaaaatgcgctggag
gagatcaaggtggagctgattgaccgctttggcctgttgcctgacgcggcgcgtaatctg
cttgatatcgccatgttgcgccagcaggcgcagaaactggggatccgcaaactggagggg
aatgataaaggcggcttgattgagtttaacgagaagaaccacgttaacccggcgtggttg
attggcttgttgcagaagcagccgcagcatttccgcctcgatggcccgacgcggctgaag
tttttccaggagttgagcgagcgtaaaacccgcatggagtgggtgcgcaactttatgcag
cagctggcggagaacgccgtcgcctga
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