Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 (serotype K1): KP1_2074
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Entry
KP1_2074 CDS
T00910
Symbol
rne
Name
(GenBank) RNase E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kpu
Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 (serotype K1)
Pathway
kpu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kpu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KP1_2074 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kpu03019
]
KP1_2074 (rne)
03009 Ribosome biogenesis [BR:
kpu03009
]
KP1_2074 (rne)
Enzymes [BR:
kpu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KP1_2074 (rne)
Messenger RNA biogenesis [BR:
kpu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KP1_2074 (rne)
Ribosome biogenesis [BR:
kpu03009
]
Prokaryotic type
rRNA processing factors
KP1_2074 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
BAH62786
LinkDB
All DBs
Position
complement(2018986..2022219)
Genome browser
AA seq
1077 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQ
TPHYSVLRVRKGEETSTLSYLLPKLHEEEMALPGDDEPAERKRPEQPALAAFVMPDAPPA
PMLEEPAAAPVAAAAPVAAAAPAQPGLLSRFFSALKNIFSGAEEAKPAEVQVEKKAEEKP
ERQQERRKPRANNRRDRNDRRDNRDNRDNRDNRDNRDTRADNAEGREPRESREENRRNRR
EKPSQNVEARDVRQTSGDDAEKAKSRDEQQPRRERTRRRSDDKRQAQQEAKAQTREEPVV
QETEQEERVQTLPRRKPRQLAQKVRVESAVVEPVAEIVPEAVVAEVIAPHSEPVKAELPA
GVESVADQDENGESREANGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACAS
PEMASGKVWIRYPVVRPQDQQPEEVQVQDASVAKTVEAVAAPVAVVETVTAAPVTVEPAT
MEPVTAEPVVVEPVAAAEPLVVDAAEVVAPAAVEPAPQEPVTEAPAVEAPQAIAPVTLDA
EPVVVEPEAVETTPVVAAPVETIAPVAETVEQAPVTEAAPAEPVKAEPPVSKPVVVAGHR
HATAPMTRAPAPDYVPEAPRHSTWVRPPFAFEGKGAAGGHSATHKATAEPTRPQPVE
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgtcgcccttgttgat
gggcagcgcctgtacgacctggatatcgaaagccccgggcacgaacagaaaaaagcgaac
atctacaaaggcaaaatcacccgcattgaacccagccttgaagccgcgtttgttgattac
ggcgccgagcgtcatggtttcctccccctcaaagaaatcgcccgcgaatacttccccgcc
aactacaatgcgcatggtcgtcctaatatcaaagacgtactgcgggaaggtcaggaagtt
atcgtgcagattgataaagaagaacgcggcaacaaaggcgctgcgctcaccacctttatc
agcctcgcgggcagctatctggtactgatgccgaacaacccgcgcgccgggggaatttcc
cgccgtatcgagggcgacgaccgtaccgaactgaaagaagcgctggcgagcctggagctt
ccggacggcatgggcctgatcgttcgcaccgctggcgtcggcaaatccgccgaagccctg
cagtgggacctgagcttccgcctgaagcactgggaagcgattcagaaagccgcggaaagc
cgtccggcgccgttcctgatccaccaggaaagcaacgtcattgtccgcgccttccgtgac
tacctgcgccaggacatcggcgaaatcctgatcgataacccgaaagtgcttgagctggcg
cgccagcatatcgccgcgctgggtcgtccggatttcagcagcaaaataaaactgtacacc
ggtgaaatcccgctgttcagccattatcagatcgaatcgcaaattgagtccgccttccag
cgcgaagtgcgcctgccttccggcgggtctatcgttatcgatagcaccgaagcgctgacc
gcgatcgatatcaactccgcccgcgccacccgcggcggcgatatcgaagagacagccttc
aataccaacctcgaagcggctgacgaaattgcccgccagctgcgtctgcgcgacctcggc
ggcctgatcgttatcgacttcatcgatatgaccccggttcgccaccagcgcgccgtggag
aatcgtctgcgcgaagccgtccgtcaggaccgtgcgcgcattcagatcagccatatttcg
cgcttcggcctgctggagatgtcccgtcagcgcctgagcccgtcgctgggcgagtccagc
caccacgtctgcccgcgctgctccggcaccggcaccgtgcgtgataacgaatcgctgtcg
ctctctattctgcgtctgatcgaagaagaagcgctgaaagagaataccaaagaagtccac
gccattgttccggtaccgatcgcctcctatctgctgaacgaaaaacgtgccgcagtgagc
gctatcgaatcccgtcagggcgatgtgcgcgttattatcgtgccaaacgacgaaatgcaa
acgccgcactactccgtcctgcgcgtgcgcaaaggtgaagaaacctcaacgctgagctat
ctgctgccgaagctgcatgaagaagaaatggcgctgccaggcgacgatgagccggcggag
cggaaacgtccggaacagccggccctggccgcttttgtcatgccagatgcgccgccagcc
ccgatgctcgaagagcctgccgccgcgcctgtcgccgcagcggcaccggtcgcggccgcc
gcaccggcgcagcctggcctgctctcacgcttcttcagcgcgctgaagaatatcttctct
ggcgccgaagaggccaaaccggctgaagttcaggtcgagaagaaagcggaagaaaaaccg
gagcgtcagcaggagcgtcgtaaaccgcgcgccaacaaccgccgcgaccgcaacgaccgc
cgtgataaccgcgacaatcgtgacaaccgcgataaccgtgacaatcgcgacacccgtgcg
gacaatgccgagggccgtgaaccgcgcgaatcgcgtgaagagaaccgtcgcaaccgtcgc
gagaagccgtcgcagaacgtggaagcccgtgatgttcgccaaacctcaggcgacgacgcg
gagaaagcgaaatcccgtgacgagcagcagccgcgccgcgaacgcacccgccgccgcagt
gacgacaaacgtcaggcgcagcaggaagccaaagcgcagactcgcgaagagccggttgtg
caggagacggagcaggaagagcgtgtacaaactctgccgcgtcgtaaaccgcgccagctg
gcacagaaagtgcgcgttgagtccgctgtcgtcgagccagttgccgagatcgtgccagaa
gccgtagtggctgaagttatcgctccgcacagcgagccggtgaaagccgagctgccggca
ggggtggagagcgtggcggaccaggacgaaaatggcgaatcccgtgaagcgaacggtatg
ccgcgtcgctcacgtcgctccccgcgtcacctgcgcgtcagcggtcagcgtcgtcgtcgc
tatcgtgacgaacgctatccgacccagtcgcctatgccgctgaccgtagcctgcgcatcg
ccggagatggcttccggtaaagtctggatccgctacccggtggttcgtccgcaggatcag
cagccggaagaggttcaggttcaggacgccagcgtcgcgaaaactgtcgaggccgtagcg
gccccggtcgccgtcgttgaaaccgttaccgctgcgccggtcaccgtcgagccggctacc
atggaaccagtaaccgctgagccggtagtcgtcgagccggtagcggccgccgagccgctg
gtcgttgatgctgcggaagttgtcgcgccagcagccgtcgagccagcgcctcaggagccg
gtcaccgaagcaccggctgtcgaagcgcctcaggctatcgcgccagtgacgctcgacgcc
gagccggtggtggtagaacctgaagcggtggaaacgacgcctgtcgttgcagcgccagtg
gaaactatcgccccggtcgcagaaaccgtggagcaagcgccagtgaccgaagcggcccct
gccgaaccggtcaaagccgagcccccggtgagcaagccggtcgtagtggcgggtcatcgc
catgccaccgcgccaatgacccgtgcgccagctccggactatgtcccggaagcaccgcgt
catagcacctgggtgcgcccgccgttcgcctttgaaggtaaaggcgccgccggtggtcat
agcgcgacccataaagccaccgctgaaccgactcgcccacagcccgtcgagtaa
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