Kitasatospora setae: KSE_31990
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Entry
KSE_31990 CDS
T01648
Symbol
rpoC
Name
(GenBank) putative DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ksk
Kitasatospora setae
Pathway
ksk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ksk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KSE_31990 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ksk03021
]
KSE_31990 (rpoC)
03400 DNA repair and recombination proteins [BR:
ksk03400
]
KSE_31990 (rpoC)
Enzymes [BR:
ksk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KSE_31990 (rpoC)
Transcription machinery [BR:
ksk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KSE_31990 (rpoC)
DNA repair and recombination proteins [BR:
ksk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KSE_31990 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BAJ29009
NITE:
KSE_31990
UniProt:
E4NCS8
LinkDB
All DBs
Position
complement(3595201..3599094)
Genome browser
AA seq
1297 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDDERRQRDLPSLEAHVSVERQQIENRRDSDLEARAKKAESD
LAELEAEGAKADVRRKVREGAEREMKQLRDRTQREIDRLDEVWSRFKNLKVQDLEGDELL
YRELRDRFGTYFSGSMGAAALKDRLESFDLGEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNKPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTSDREEVKGKGR
SFSSTAEAIMAFDARELDVQATIDLRLAAGTVPPRGWTPPVDEDGQPTWHEGEPFRITTT
LGRALFNELLPEDYPFVDYEVGKKQLSAIVNDLAERYPKVVVAAALDNLKAAGFHWSTRS
GVTVSISDVIVPPSKPAILEGYEAQAEKVQRQYERGLITDNERKSELIGIWTRATNEVAD
AMAANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIARPIKASFREGLSVL
EYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLTIGSVGAD
GVLRKADDVETSVYARMLAEDITVDGKLIATANTDLGDVLMDELIRHGVSSVKVRSILTC
ESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQG
LPRVVELFEARTPKGVAPISEAQGRVRIEDTEKTRKVVVTPDDGSDEIAYPVSKRVKLLV
SEGEAVEVGQKLTVGATNPHDVLRIMGQRAVQIHLVAEVQKVYNSQGVSIHDKHIEIIIR
QMLRRVTIIESGDAELLPGELVERGRFEQENRRVVSEGGHPASGRPQLMGITKASLATES
WLSAASFQETTRVLTDAAIHAKSDPLLGLKENVILGKLIPAGTGLPRYRNIRVEPTEEAK
AAMYSAVGYDDYDLSPFGAGSGQAVPLDDYDYGPYTG
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
gtgcttgacgtcaacttcttcgacgagctccgcatcggactggccaccgccgacgacatc
cgccagtggtcgcacggcgaggtgaagaagccggagaccatcaactaccgcacgctgaag
ccggaaaaggacggcctcttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgcgagcggatgggccacatcgagctggccgccccg
gtcacccacatctggtacttcaagggtgtcccgtcccgcctgggctacctgctggacctg
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatgatcacctgggtcgac
gacgagcgccgccagcgcgacctgccgtccctggaggcgcacgtctcggtcgagcggcag
cagatcgagaaccgccgcgactccgacctggaggcccgggccaagaaggccgagtccgac
ctggccgagctggaggccgagggcgccaaggccgacgtgcgccgcaaggtgcgcgagggc
gccgagcgcgagatgaagcagctgcgcgaccgcacgcagcgcgagatcgaccgcctcgac
gaggtctggagccggttcaagaacctcaaggtccaggacctggagggcgacgagctgctc
taccgcgagctgcgcgaccgcttcggcacctacttctccggctcgatgggcgccgcggcc
ctcaaggaccgcctggagtccttcgacctgggcgaggaggccgagcgcctccgcgagatc
atccgcaccggcaagggccagaagaagacccgcgcgctcaagcgcctcaaggtcgtctcc
gccttcctgcagaccagcaacaagcccaagggcatggtgctcgactgcgtcccggtgatc
ccgccggacctgcgcccgatggtccagctcgacggtggccgcttcgccacctccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgaagcggcttctcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtcgacgcg
ctcttcgacaacggccgccgcggccgcccggtcacgggccccggcaaccgtccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccgccagaacctgctcggcaag
cgcgtcgactactcggcccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggcctgccgaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcgcccgc
cccgtggtgtgggacgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgc
gcgcccaccctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggcgaccag
atggccgtccacctgccgctctccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgaagccggccgacggtcgccccgtcaccatgccgacccaggac
atggtgctgggcctgttcttcctcacctcggaccgcgaggaggtcaagggcaagggccgc
tccttctcctcgaccgccgaggcgatcatggccttcgacgcccgcgagctggacgtccag
gccaccatcgacctgcgcctggccgccggcaccgtcccgccccgcggctggaccccgccg
gtggacgaggacgggcagccgacctggcacgagggcgagccgttccggatcaccaccacg
ctggggcgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgactacgag
gtcggcaagaagcagctctcggcgatcgtcaacgacctcgccgagcgctacccgaaggtc
gtcgtcgccgcggcgctcgacaacctgaaggcggccggcttccactggtcgacccgttcg
ggcgtcaccgtctcgatctcggacgtcatcgtcccgccgagcaagcccgccatcctggag
ggctacgaggcgcaggcggagaaggtccagcgccagtacgagcgcggtctgatcaccgac
aacgagcgcaagtccgagctcatcggcatctggacccgcgcgaccaacgaggtcgccgac
gcgatggccgcgaacttcccgaagacgaaccccatcttcatgatggtcgactcgggcgcc
cgcggaaacatgatgcagatgcgtcagatcgccggtatgcgtggcctcgtgtcgaacgcg
aagaacgagaccatcgcccgtccgatcaaggcctcgttccgtgagggcctgtccgtgctg
gagtacttcatctccacccacggtgcccgcaagggtctggccgacaccgcgctgcgcacc
gccgactcgggttacctgacccgtcgtctggtggacgtctcgcaggacgtgatcatccgc
gaggaggactgcggcaccgagcgcggcctcaagctgacgatcggctcggtcggcgcggac
ggcgtgctgcgcaaggccgacgacgtcgagaccagcgtctacgcccgcatgctcgccgag
gacatcaccgtcgacggcaagctgatcgccaccgccaacaccgacctcggcgacgtcctg
atggacgagctgatccggcacggcgtgagctcggtcaaggtccgctcgatcctgacctgc
gagtccgcggtcggcacctgtgccttctgctacggccgctcgctggccaccggcaagctg
gtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagcccggcacc
cagctgaccatgcgcaccttccacaccggtggtgtggccggtgacgacatcacccagggt
ctgccgcgtgtcgtcgagctcttcgaggcccgcacccccaagggtgtggccccgatctcg
gaggcgcagggccgcgtccggatcgaggacaccgagaagacccgcaaggtcgtcgtcacc
cccgacgacggctcggacgagatcgcctacccggtctccaagcgcgtcaagctgctggtc
agcgagggcgaggcggtcgaggtcggccagaagctgaccgtcggcgcgaccaacccgcac
gacgtgctgcgcatcatgggccagcgggccgtccagatccacctggtcgccgaggtccag
aaggtctacaactcgcagggcgtgtcgatccacgacaagcacatcgagatcatcatccgg
cagatgctccgccgcgtgacgatcatcgagtcgggcgacgccgagctgctcccgggcgag
ctcgtcgagcgcggccgcttcgagcaggagaaccgtcgcgtggtctccgagggcggccac
cccgcctccggccgtccgcagctgatgggtatcaccaaggcctcgctggccaccgagtcc
tggctgtcggccgcctccttccaggagacgacccgggtcctcaccgacgcggcgatccac
gccaagtcggacccgctgctgggcctcaaggagaacgtcatcctcggcaagctcatcccg
gccggtacgggtctgccccgctaccgcaacatccgggtcgagccgaccgaggaggccaag
gccgcgatgtactcggccgtcggctacgacgactacgacctgtcgccgttcggcgcgggc
tccggtcaggccgtcccgctggacgactacgactacggcccgtacaccggctga
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