Kushneria phosphatilytica: FY550_14035
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Entry
FY550_14035 CDS
T06200
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kuy
Kushneria phosphatilytica
Pathway
kuy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kuy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FY550_14035 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kuy03021
]
FY550_14035 (rpoC)
03400 DNA repair and recombination proteins [BR:
kuy03400
]
FY550_14035 (rpoC)
Enzymes [BR:
kuy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FY550_14035 (rpoC)
Transcription machinery [BR:
kuy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FY550_14035 (rpoC)
DNA repair and recombination proteins [BR:
kuy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FY550_14035 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
DUF6744
DUF3150
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QEL12149
UniProt:
A0A5C1A4V6
LinkDB
All DBs
Position
complement(3037735..3041949)
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLVKVLKSQAQSDEFDAIRISLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMGHIELASPVAHIWFLKSL
PSRIGMLLDMTLRDIERVLYFESFVVIDPGMTTLERGQLLNDEQYFEALEEFGDDFDARM
GAEAVQALLADIDLGEEVERLREEIPQTNSDTKVKKLSKRLKLLEAFNRSGNHPGWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYSKLQANGQASTIKAAKKMVEREVPEVWDILAEVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLESQLES
RAMMMSTNNVLSPANGEPIIVPSQDVVLGLYYMTRERVGAKGEGMTFSDLEEVERAYGTQ
SVELHARIRVRLTEWLHDEVQDTLTEQIALKDTTVGRALLYRIVPRGMAFELVDRPMKKK
AISQLINSAYRHVGLKDTVIFADQLMYTGFRLATWSGASIGVNDFVIPESKTAIIDAAEE
EVKEIEDQFSSGLVTAGEKYNKVIDIWAKANDRVAREMMTGISQQTVTDQEGNEVEQESF
NSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVVTEHDCGTEEGLTLHPVIEGGDIIVSLAERV
LGRVVARDVVDPESQEVLIARNTLLDEAWCARLDTMGVDEIVVRSTITCETAHGVCSCCY
GRDLARGHQVNVGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDSVQVKHGGRVR
LHNMKNVERADGQLVVVSRSSALAVADEHGREREYYKLPYGAELSVKDGDEVDSGQIVAR
WDPHTHPIVSEVEGRVQFTDMEEGVTINRTVDEMTGLSSIEVIESGNRPSSGRDKRPMIM
LQDEQGEHISLPGSNTPVQYMLPGNAIVSVDNGAAVGIGEVVARIPVEASGNKDITGGLP
RVADLFEARKPKEPAILAEKSGTVTFGKETKGKRRLTINPADGDPIEMLIPKWRQIGVFE
GETVERGEVISEGPSNPHDILRLLGVSELAKYIVAEIQDVYRLQGVGINDKHIEVIVRQM
LRKVEISEVGDSSFIPGEQVELVRVLEENASLAEQDKFPARFERVLLGITKASLATESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAHHAERRRKREEADRTQ
HPSAWDVEQQLGEHLTALDADDDQ
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtcaaagttctcaaatctcaggcccagtccgatgagttcgatgcgatc
aggatttcgctcgcctcgccggacatgattcgctcgtggtcctatggcgaggtcaagaag
cccgagaccatcaattatcggaccttcaagccggagcgcgacgggctgttctgcgccaag
atcttcggtccggtaaaggactacgagtgcctctgcggcaagtacaagcgcatgaagcat
cgcggcatcatctgcgagaagtgcggcgttgaggttaccaaggccgcggtgcgtcgcgag
cgcatgggccatatcgagctggccagtccggtcgcgcacatctggtttttgaagtcgctg
ccgtcgcgtatcggcatgctgctggacatgaccctgcgcgatatcgagcgggtgctctat
ttcgagagcttcgtcgtgatcgatccgggcatgaccacgctggagcgtgggcaactgctc
aatgacgaacagtacttcgaagcgctggaagagtttggtgacgatttcgatgcccgcatg
ggtgccgaagccgtccaggcactgctggccgatatcgatctgggcgaagaagtcgaaaga
ctgcgcgaggaaatcccgcagaccaactctgacaccaaggtcaagaaactctccaagcgg
ctcaagctgctggaagccttcaaccgctcgggtaatcatccgggctggatgatcatggaa
gtgttgccggtgctgccgccggatctgcgcccgctggtgccactggatggtggtcgcttt
gcgacgtccgatctcaacgatctctatcgtcgcgtgatcaaccgcaacaaccgcctcaag
cggctgctcgatctatcggcgcctgacattatcgtgcgcaatgagaagcgcatgctgcag
gagtcggtggatgcgctgctcgataacggccgtcgcggccgcgcgattaccggatccaac
aagcgaccgctgaaatcgctggccgacatgatcaagggcaagcaggggcgcttccgtcag
aacctgctgggcaagcgtgtcgactattccggtcgttcggttatcaccgtgggcccgaca
ctgcgtttgcaccagtgtggtctgcccaagaagatggcgctggagctgttcaagccgttc
atctattcgaagctgcaggccaatggccaggcgtccaccatcaaggcggccaagaagatg
gtcgagcgtgaggtccccgaggtctgggatatcctcgccgaggtgattcgtgagcatccg
gtgctgctcaaccgcgcgccgacgctgcaccgtctgggtattcaggcattcgagccgctg
ctgatcgaaggcaaggccatccagcttcatccgctggtctgtgcggcctacaacgccgac
ttcgatggtgaccagatggccgtccacgtcccgctgacgctggagtcccagcttgagtcg
cgggcgatgatgatgtcgaccaacaacgtactgtcgcccgccaatggcgagccgatcatc
gtaccctcgcaggatgtggtgctgggtctgtattacatgacccgtgagcgtgtaggtgcg
aagggtgaaggcatgaccttctccgatctcgaagaggttgagcgtgcctatggcactcag
agtgtcgagctgcacgcccgcattcgggtgcgtctgaccgagtggctgcatgatgaggta
caggacactctgaccgaacagattgcgctcaaggatacgacggtcggacgtgcactgctc
tatcgcatcgtgccaaggggtatggcgttcgagctggttgatcggccgatgaagaagaag
gccatctctcagctgatcaattcggcctatcggcatgtggggctcaaggataccgtcatc
tttgccgaccagttgatgtataccggcttccgtctggccacctggtcgggtgcttcgatc
ggcgttaatgacttcgttatcccggagtcgaagaccgccatcatcgatgccgccgaggaa
gaggtgaaggagatcgaggaccagttctcctcgggtctggtgacggccggcgagaagtac
aataaggtgatcgatatctgggccaaggccaacgaccgtgtggcccgtgaaatgatgacc
ggtatttcccagcagaccgtgaccgaccaggaaggtaacgaagtcgagcaggagtcgttc
aacagcgtcttcatcatggcggactccggcgcgcgtggtagcgcggcgcagattcgtcag
ctggcgggtatgcgcggtctgatggcgaaaccggatggctcgatcatcgagacgccgatt
accgccaacttccgtgaaggcctgaacgttctgcagtacttcatttcgacccacggcgcg
cgtaagggcctggcggatacggccttgaagacggccaactccggttacctgacgcgtcga
ctggtcgatgtggcccaggatctggtggtgaccgagcatgattgtggcaccgaggaaggg
ctgaccctgcatccggtcatcgaagggggcgatattatcgtctcgctggccgagcgggtg
ctgggacgtgtggtggctcgtgatgtggtcgatcccgagagtcaggaagtgctgattgcg
cgtaacaccctgcttgacgaagcctggtgtgcccgtctcgacaccatgggtgtcgacgag
atcgtggtgcgcagcaccatcacctgtgagacggcccacggcgtctgttcatgctgctat
ggtcgcgacctggctcgtggtcatcaggtcaatgtcggtgagtcggtgggcgttatcgct
gcccaatcgattggtgagccgggtacccagctcaccatgaggaccttccacattggtggt
gctgcctcgcgggcttcggcagtcgacagtgtacaggtcaagcacggtggccgtgtccgg
ctgcacaacatgaagaatgttgagcgcgccgatggccagctggttgtggtatcacgctcc
agtgcgttggcggttgccgatgagcatgggcgtgaacgggagtactacaagctgccgtac
ggtgccgagttgtcggtcaaggatggcgacgaggtcgactccggccagatcgtggcgcgc
tgggatccgcacacccatccgatcgtttcggaagttgagggtcgggtgcagttcactgac
atggaagaaggggtcaccatcaaccgtaccgttgatgaaatgaccggtctttcctccatc
gaggtgatcgagtccggtaaccgtcccagctccggtcgcgacaagcgcccgatgatcatg
ctgcaggacgagcagggtgagcacatctcactgccgggttcgaatacgccggtgcagtac
atgctgccgggcaacgccatcgtctcggttgataatggcgctgctgtgggtatcggtgaa
gtcgtggcacgtatcccggtagaggcgtccggcaacaaggacattaccggtggtctgccg
cgtgtggctgatctgttcgaagcgcgcaagcccaaggaaccggccattctcgccgagaag
agcggtaccgtgacctttggcaaggaaaccaagggcaagcggcgtctgacgatcaacccg
gccgacggcgatccgatcgaaatgctgattccgaaatggcgtcagatcggggtgttcgaa
ggtgaaacggttgagcgtggcgaagtaatttcggaaggcccgagcaacccgcatgatatt
ctgcggctgctgggcgtctccgagttggcgaaatacatcgtcgctgaaatccaggacgtc
tatcgcctgcagggtgtcggcatcaatgacaagcacatcgaggtcatcgtgcgtcagatg
ctgcgcaaggttgagatcagcgaagtgggtgacagttcgttcatccccggcgaacaggtc
gagctggtacgcgtgctggaggaaaatgcaagtctggccgagcaggacaagttccccgca
cgtttcgaacgggtactgctgggtattaccaaggcttcgctggcgaccgagtcgttcatc
tcggcggcctccttccaggagactacacgtgtgctgactgaagcggccgtaaccggcaag
cgcgattatctccgtggtctcaaggagaacgttgtggtgggtcgtttgattccggcaggc
accgggcttgcacaccacgccgaacgtagacgcaagcgtgaggaagccgaccgtacgcag
catccgtcggcctgggatgtcgagcagcagttgggtgagcacctgactgcactggatgcc
gacgacgaccagtaa
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