Kocuria varians: CIB50_0000216
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Entry
CIB50_0000216 CDS
T06882
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
kvr
Kocuria varians
Brite
KEGG Orthology (KO) [BR:
kvr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kvr03032
]
CIB50_0000216 (topA)
03400 DNA repair and recombination proteins [BR:
kvr03400
]
CIB50_0000216 (topA)
Enzymes [BR:
kvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CIB50_0000216 (topA)
DNA replication proteins [BR:
kvr03032
]
Prokaryotic type
DNA Topoisomerases
CIB50_0000216 (topA)
DNA repair and recombination proteins [BR:
kvr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CIB50_0000216 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
SBP_bac_3
Toprim_2
Rep_1B
Motif
Other DBs
NCBI-ProteinID:
QMS55531
UniProt:
A0A7D7KXX7
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All DBs
Position
complement(234778..237648)
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AA seq
956 aa
AA seq
DB search
MASKATKNAGTGKSLLIVESPSKVKTIAGYLGDAYEVESSMGHIRDLPQPSELPTDMKKG
PYGKFAVDVEHEFDPYYVVNPDKKKKVTELKRKLKDADALYLATDGDREGEAIAWHLLQV
LKPKVPVYRLTFPEITKEAIERGFGQLRDIDQDLVDAQETRRILDRLYGYEISPVLWRKV
SSGLSAGRVQSVATRLVVQRERERIAFVPADYWDLTGQFARREGQDAGRPFSARLSSLNA
RRVATGKDFNDRGELKSSAADGPVALDETVATALAAGLQDAAFAVRSLETKPYTRRPAAP
FTTSTLQQEAARKLRFTSRTTMRVAQRLYENGYITYMRTDSVALSDQAVNAARAQAKELY
GAEFVPASKRVYASKSKNAQEAHEAVRPAGDRFRTPSQVRSQLSVDEFKLYELIWKRTVA
SQMEDAKGSTATVRLGAAATAAAGDHAGDDAEFSASGTVITFRGFLAAYEEGRDVNPELA
QDSGKKSQKDEDKRLPVMSEGDALDASEVTADGHTTTPPARYTEASLVKTLDELGIGRPS
TYAATISTIMDRGYVQVRGSALIPSWLAFSVVRLLEDHFSDYVDYDFTAELEDDLDRIAR
GEAERVAWLTGFYFGDTPEEPGLKPIVDDLGEIDARAVNSIPVTDEITLRVGKYGPYLES
GGAVDPETGEITDPVRANVPLDLAPDELTPEKARELMEIGKADGRELGVNPENGRMVVAK
DGRYGPYVTEIVPEPTQEELDAIPTEYYKNGKPKPKKIEKPKPKTASLFSSMNLQDITLD
DALKLLSLPRELGEDTDGETITVQNGRYGPYLKKGSDSRSISSEEQIFTITLDEAKTIYA
QPKQRGRQAARPPLADLGADPLTEKRMAIKEGRFGAYITDGETNVTVPRAEAIEQITAAR
ASQLLAEKRAKGPAPAKSGSRTRAKSTATKSATAKKPAAKKPAAKKPAASKAAAKK
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
ttggcatccaaggccaccaagaacgccggtacgggcaagagcctgctgatcgtggagtca
ccgtccaaggtgaagacgatcgcggggtacctgggggacgcctacgaggtggagtcctcc
atgggtcacatccgcgacctgccccagccctcggagctgcccacggacatgaagaagggt
ccgtacggcaagttcgccgtggatgtggagcacgagttcgacccgtactacgtggtcaac
ccggacaagaagaagaaggtcacggaactcaagcgcaagctcaaggacgcggacgcgctc
tacctcgccacggatggtgatcgcgagggcgaggccatcgcgtggcacctgctccaggtg
ctcaagccgaaggtcccggtctaccggctcacgttcccggagatcaccaaggaggccatc
gagcgcggcttcggccagctgcgcgacatcgaccaggaccttgtggacgcccaggagacc
cggcgcattctggaccgcctctacggctacgagatctcgcccgtactgtggcgcaaggtc
tcctccgggctctccgcgggacgcgtgcagtccgtggctacgcgactcgtggtccagcgc
gagcgggagcggatcgcgttcgtccccgccgactactgggacctcacgggccagttcgcc
cgccgggagggccaggacgccgggcgcccgttcagcgcgcgcctgagctccctcaacgct
cgccgcgtggccactggcaaggacttcaacgaccgcggagagctgaagtcctccgccgcg
gacgggccggtcgcgctcgacgagacggtggcgacggcgctcgcggccgggctgcaggac
gccgccttcgcggtccgctccctggagaccaagccctacacccgccgtccggcggccccg
ttcaccacctccacgctgcagcaggaggcggcccgcaagctgcggttcacctcccgcacc
accatgcgggtggcgcagcggctgtacgagaacggctacatcacctacatgcgaacggac
tcggtggcgctgtccgaccaggccgtcaacgcagcccgggcgcaggccaaggagctctac
ggggccgagttcgtgcccgcctcgaagcgcgtgtacgcctccaagtccaagaacgcccag
gaggcccacgaggccgtgcgccccgccggggaccgcttccgcacgccgtcgcaggtgcgc
tcgcagctgtccgtggacgagttcaagctctacgagctgatctggaagcgcaccgtggcc
tcgcagatggaggacgccaagggcagcacggccaccgtgcgcctgggggccgcggccacc
gcggccgcgggcgaccatgccggggacgacgccgagttctcggcctccggaaccgtcatc
accttccgaggattcctggccgcgtacgaggagggccgggacgtgaacccggagctcgcg
caggactccgggaagaagtcgcagaaggacgaggacaagcgcctgcccgtgatgtccgag
ggggacgcgctggacgcctccgaggtcaccgcggacgggcacaccaccacccctccggcg
cgctacaccgaggcgtccctggtgaagacgctggacgagctgggcatcggacgtccctcc
acgtacgccgccacgatctccacgatcatggaccgcggctatgtgcaggtgcgcggctcg
gccctgatcccgtcctggctcgcgttctcggtggtgcgcctgctcgaggaccacttctcg
gactacgtggactacgacttcacggcggagctggaggacgacctggaccggatcgcccgc
ggcgaggccgaacgggttgcgtggctcaccggcttctacttcggggacacccccgaggag
cccgggctcaagccgatcgtggacgacctcggggagatcgacgcccgcgcggtgaactcc
atcccggtcacggacgagatcaccctgcgcgtgggaaagtacggcccctacctggagtcc
ggcggcgcggtggacccggagacgggcgagatcaccgaccccgtgcgcgcgaacgtcccc
ctggacctcgccccggacgagctgacgccggagaaggcgcgggagctcatggagatcggc
aaggcggacggccgcgagctgggcgtgaacccggagaacggccggatggtcgtggccaag
gacggccgctacggtccgtacgtcaccgagatcgtgcccgagcccacgcaggaggagctc
gacgcgatccctacggagtactacaagaacggcaagcccaagcccaagaagatcgagaag
cccaagcccaagacggcgtcgctgttctcatccatgaacctgcaggacatcacgctcgac
gacgccctgaagctgctgtccctgccgcgcgaactcggcgaggacacggacggcgagacg
atcaccgtgcagaacggccgctacggcccgtacctgaagaagggctcggactcgcgctcc
atctcctccgaggagcagatcttcacgatcaccctggacgaggcgaagaccatctacgcc
cagccgaagcagcgggggcgccaggccgccaggccgccgctcgcggacctcggcgcggat
ccgctcaccgagaagcggatggccatcaaggagggccgcttcggtgcgtacatcaccgac
ggcgagaccaacgtgacggtcccgcgcgccgaggcgatcgagcagatcaccgcggcccgt
gcatcccagctgctcgcggagaagcgggcgaagggcccggccccggcgaagtccggctcg
cggacccgcgcgaagagcacggccaccaagagcgcgacggccaagaagccggcagccaag
aaacctgccgccaagaagccggccgccagcaaggccgcggcaaagaagtag
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