Kurthia zopfii: NCTC404_00893
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Entry
NCTC404_00893 CDS
T05934
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
kzo
Kurthia zopfii
Pathway
kzo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kzo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC404_00893 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kzo03021
]
NCTC404_00893 (rpoB)
03400 DNA repair and recombination proteins [BR:
kzo03400
]
NCTC404_00893 (rpoB)
Enzymes [BR:
kzo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC404_00893 (rpoB)
Transcription machinery [BR:
kzo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC404_00893 (rpoB)
DNA repair and recombination proteins [BR:
kzo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC404_00893 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
VEI05500
LinkDB
All DBs
Position
1:914436..917996
Genome browser
AA seq
1186 aa
AA seq
DB search
MTGQLVQYGQHRQRRSFARIKEVLELPNLIEIQSTSNEWFLEEGLREMFHDISPIEDFTG
NLSLEFVDYGLGDPKYDVDECKQRDATFAAPLRVKVRLHNKETGDVKEQEVFMGDFPLMT
ETGTFIINGAERVIVSQLVRSPSVYYHDKTDKNGKKGFGATVIPNRGAWLEYETDAKDVV
HVRIDRTRKLPVTVLLRALGFASDQEIIDLIGDNEYLRNTLEKDNTESTEKALLEIYERL
RPGEPPTVESAKNLLYSRFFDPKRYDLAAVGRYKMNKKLHIKNRLFNQTIAETLVDPETG
EILVEKGTVIDRRVLDKIIPNLENGVGFKTLSKIGGVIEGDVLVQEIKIYAPNDESQKEI
KVISNAYIDDEVKNITPADVVASVSYFFNLLYGVGDTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSINDTESIVPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT
HKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNKFG
FIETPYRRVDPETGKITKHIDYLTADEEDNYVVAQANSLLNEDFTFTEDEVVGRFRGDNS
VFKRNSIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLNPEAPFVGTG
MEHVDARDSGAAVIAKYTGIVEHVEARSIHIRRIEEVDGKEVQGDLTKYKLQKFIRSNQG
TSYNQRPLVSVGDRVNPRDILADGPSMEKGELALGRNVVVAFMTWNGYNYEDAVIMNERL
VKDDVYTSVHIEEYESEARDTKLGPEEITRDIPNVGEEALRNLDERGIIRIGAEVNDGDI
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREDGDEL
SPGVNQLVRVYIVQKRKIRVGDKMAGRHGNKGVISRILPEEDMPYLPDGTPVDIMLNPLG
VPSRMNIGQVLELHLGMAARYLGVHMASPVFDGASDDDVWKTMEEAGMNRDGKSVLYDGR
SGEPLDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGDSVPEPGVPESFKVLIKELQSLGLD
VKMLNINDEEVELRDLDEDEENSQNEALNILPKDESDAKSATSQEN
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggtcaactagttcagtacggacaacaccgccagcgtagaagcttcgcgcgtatt
aaagaggtgctagaacttccgaatcttattgagattcaaagcacttcaaacgagtggttc
cttgaagaaggattacgtgaaatgtttcatgacatctcaccaatcgaagacttcactgga
aatttatcacttgaattcgtcgactatggtcttggagatccgaaatatgatgtcgatgaa
tgtaaacaacgcgacgcaacttttgccgcaccattgcgtgtaaaagtacgtttgcataac
aaagaaacaggagacgtgaaagaacaagaagtgttcatgggtgatttcccattgatgact
gaaactggtactttcattattaatggcgcagagcgcgttatcgtttcccaattagtaaga
tcaccaagtgtatattatcacgataaaacagacaaaaacggtaaaaaaggttttggtgca
actgtaattcctaaccgtggtgcatggcttgaatatgaaacagatgcgaaagatgtagtg
catgttcgtatcgaccgtactcgtaaattaccggtaacagtacttttacgtgctttaggt
tttgcttcagatcaagaaatcattgatttaattggtgataatgaatacttacgtaacact
ttagagaaagataatacagaaagcacagaaaaagcgctattagaaatctatgagcgtcta
cgtcctggtgaaccaccaacagtagaaagtgctaaaaacttattatattctcgcttcttc
gacccaaaacgctacgatttagcagctgtaggtcgttacaaaatgaacaaaaaacttcac
attaaaaaccgtctattcaatcaaacaattgctgaaacattggttgatcctgaaacaggc
gaaattttagtggaaaaaggtactgtcattgaccgtcgcgtcctagacaaaattatccct
aacttagaaaatggagtaggtttcaaaacactttctaaaattggtggcgtaattgaaggc
gatgtattagtacaagaaattaaaatctacgctccaaatgatgaatcacaaaaagaaatc
aaagtaatcagtaacgcatacatcgatgatgaagtgaaaaatatcactccagcagacgtt
gtagcatctgtttcttatttctttaacttattatatggtgtgggcgacacagatgacatt
gaccacctaggtaaccgtcgtttacgttctgttggtgagcttctgcaaaaccaattccgt
atcggtctatctcgtatggaacgtgttgtacgtgaacgtatgtcgatcaatgacacagaa
tcaatcgttccacaacaattaatcaatatacgcccggtaattgcttcaattaaagaattc
ttcggtagttctcaattgtctcaattcatggaccaaacgaatccacttgcagaattaacg
cacaaacgtcgtctatctgcattaggacctggtggtttaacacgtgaacgtgctggtttc
gaagtacgtgacgttcactattctcactatggccgtatgtgtccaatcgaaacaccagag
ggtccgaacattggattaattaactcattatcttcatatgcaaaagtaaataaattcggt
ttcatcgaaacaccatatcgtcgtgttgaccctgaaactggaaaaattacgaagcatatt
gattatttaactgctgatgaagaagataattacgtagtagctcaagcgaactctttatta
aatgaagacttcacatttacagaagacgaagttgttggccgtttccgtggcgataactca
gtattcaaacgtaactcaattgactacatggatgtatctccaaaacaagtagtttctgct
gccacagcttgtattccattcttagaaaatgatgactcaaaccgtgcgcttatgggtgcc
aacatgcaacgtcaagctgttcctttattaaatcctgaagcgcctttcgtaggtacaggt
atggaacacgtagacgctcgtgactcaggtgcagctgttatcgctaaatacactggtatt
gttgagcatgttgaagcacgttcaattcatatccgtcgtattgaagaagtagatggaaaa
gaagtacaaggcgacttaacgaaatataaattacaaaaattcatccgttctaaccaaggt
acaagttacaaccaacgtccactagtaagtgtcggcgatcgtgttaacccacgtgatatt
ttagctgatggtccttctatggaaaaaggtgagcttgcattaggtcgtaacgtagtagta
gcgttcatgacttggaatggttataactatgaggatgctgtaatcatgaacgaacgtctt
gtaaaagacgacgtttacacttcagttcatattgaagaatatgaatcagaagcgcgtgac
actaaattagggcctgaagaaattacgcgtgacattccaaatgtcggcgaagaagctctt
cgtaaccttgacgaacgtggaatcatccgcatcggtgctgaagtaaacgatggcgatatt
ctagttggtaaagtaactcctaaaggtgttacagaattaacagctgaagaacgtctatta
catgcaatcttcggtgaaaaagcgcgtgaagttcgcgatacttcattacgtgtacctcat
ggtgcaggtggtatcgttcttgacgttaaagtcttcaaccgtgaagatggcgacgagtta
tctccaggtgttaaccaattagttcgtgtttatattgttcaaaaacgtaaaattcgcgtt
ggtgacaaaatggccggacgacatggtaacaaaggtgttatctctcgtatccttccagaa
gaagatatgccgtatcttccagacggaactccagtcgacatcatgttaaacccactaggt
gtaccatctcgtatgaacatcggacaagtattagagcttcatttaggtatggctgctcgt
tacttaggcgttcacatggctagtccagtatttgatggtgcttcagatgacgacgtatgg
aaaacaatggaggaagctggtatgaaccgtgatggtaaatcagttctttatgatggtcgc
tcaggtgaaccattagacaaccgtgtatcagttggggttatgtatatgatcaaacttgcc
cacatggttgatgataaacttcacgctcgttctactggaccatactcactagttacgcaa
caaccattaggtggtaaagcgcaattcggtggacaacgtttcggtgagatggaagtttgg
gctcttgaagcatatggtgcagcgcacacacttcaagaaatcctaacagttaaatcggat
gatgttgttggtcgtgttaaaacttacgaagcaatcgtaaaaggcgacagcgttccagaa
ccaggcgttccagaatcattcaaagtattaattaaagaattacaatctttaggtttagat
gtgaaaatgttgaacatcaatgacgaagaagtagaattacgtgatttagatgaggatgaa
gaaaattctcaaaatgaagcacttaatattcttccgaaagatgaatcagatgctaagtct
gcaacatcacaagaaaactaa
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