Kurthia zopfii: NCTC404_02611
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Entry
NCTC404_02611 CDS
T05934
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease recJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
kzo
Kurthia zopfii
Pathway
kzo03410
Base excision repair
kzo03430
Mismatch repair
kzo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
kzo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NCTC404_02611 (recJ)
03430 Mismatch repair
NCTC404_02611 (recJ)
03440 Homologous recombination
NCTC404_02611 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kzo03400
]
NCTC404_02611 (recJ)
DNA repair and recombination proteins [BR:
kzo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NCTC404_02611 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NCTC404_02611 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC404_02611 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
LMWPc
Motif
Other DBs
NCBI-ProteinID:
VEI07906
LinkDB
All DBs
Position
1:complement(2546522..2548870)
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AA seq
782 aa
AA seq
DB search
MRKMTEKRWIIENPDESKVNQLMDELNINTISAKILVARGFSEVEEARAFLQVDETSVHD
PFLLNGMSEAVERINNAIEQNEQILIYGDYDADGITSTSVLKHALLELGANVDHCIPNRF
IDGYGPSERLFRKAAEDGVKLIITVDNGIAGNEPIAIAKELGVDVIVTDHHEPAKELPNA
DVIIHPRIPEDQYPFGELAGVGVAFKLAHALLGRFPEHLVEFVAIGTIADLVPLLDENRY
LVKLGLEKLQTTQHVSLNALAKVSNVPLNEITEETIGFSFGPRLNAIGRLGEAAPAVDFM
LSQDQAEAAHMAQQLDDKNKERKDIVSTMTKEAIELVENMEEISQAQVLVVAEEGWNPGV
VGIVASRLVEKYYKPTIVLGIDVEKGIAKGSARSIEGFNMYGELDQNRDVLIAFGGHPMA
AGMTLAMEDVDELRERLHAQSLVSLSPEDLIPILKIDVPVSIDEIDVDAIQATRNLAPYG
TSFAKPLYGIQETEIKSMRKIGANEDHIKMDLGENGQSLAAVGFHKGYLKDELTTGVKVS
FAGDLQINEWNGKKLPQLMISDVHTDEWQLFDLRGGSNKVSKWLQTIPIEETTFIAFKKD
TVEYFKTLIPKEITLYNEETEQTYSKFLVLLDLPTHQEQLANLLRTVEPVRIYAHFYVAN
PHLFEGMPTREQFIWYYSFLKQRKQFNVRQNLNDLAKHKGWSRAMLIFMTQVFFELKFVT
IDDGLAKIVDNPDKRAIESALIYKERTEQVALEEKLLYAQYKDLRNWFEQCFTKQPLSEE
EN
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaaatgacagagaaaagatggatcattgaaaatccagatgagtcaaaagtgaat
caattaatggacgaattaaacataaatacgatatcagcgaaaatccttgtggcgagagga
tttagtgaagtggaagaagcaagagcctttctacaagtagatgaaacttctgtccatgat
ccatttctattaaatggaatgagcgaagctgttgagcgaattaacaatgccattgaacaa
aatgagcaaattctgatctatggtgattatgacgcggatgggatcacaagtacaagtgtt
ttaaagcacgctctacttgagttaggagctaatgttgatcactgtataccgaaccgtttt
attgatggttacggcccttctgaacgccttttccgtaaggctgcagaagatggtgtgaaa
ttaattattacagtggataatggtattgcagggaatgaaccgatcgctattgcgaaagag
ttaggtgtcgatgtcatcgtgacagatcaccacgaacctgcgaaagaattgccgaatgca
gatgtcatcattcacccaagaattcctgaagatcaatacccattcggtgaacttgctggg
gtaggtgttgcattcaaattagcacatgcacttttaggtcgtttcccagagcatttagta
gaattcgttgcgattggaacgattgccgatttagtgccgcttttagatgaaaatcgttat
ttagtgaagctaggtctagagaaacttcaaactacgcaacatgtttctttgaatgcttta
gcaaaagtatcaaatgtaccattgaacgaaattacagaggaaacaattggtttctcattc
ggccctcgattaaatgccattggtcgtcttggtgaagctgcaccagcggttgatttcatg
ctgtcacaggatcaagcagaagcagctcatatggcgcaacaattagatgataaaaataaa
gagcgaaaagatatcgtatcgacaatgacgaaggaagcaatcgaactcgttgaaaatatg
gaggagattagccaagctcaagttcttgtcgttgcagaagaaggttggaatccaggggtt
gtcggaatcgtcgcatcacgtcttgttgagaaatattataaaccaacaatcgtcttaggg
atcgacgtggaaaaagggattgcaaaaggttcggcacgtagtattgaagggtttaatatg
tatggtgaattggaccaaaatcgtgatgtattaatcgcatttggcggtcacccgatggct
gcaggtatgacacttgcgatggaagatgtcgatgaattacgcgaaagactacacgcgcaa
tcattagtaagtctgtcaccggaagatttgattcccattttaaaaattgatgtgccagtg
tcaatcgacgaaattgatgttgatgcgattcaagcaacgcgaaaccttgcgccatatgga
acttcatttgcgaagcctttatacggcattcaagaaactgaaattaagtcgatgcgcaaa
atcggcgccaatgaagatcatataaaaatggacttaggtgagaatgggcaatcgcttgca
gcagttggcttccacaaaggctatttaaaagatgaattgacgacgggtgtgaaagtatca
tttgccggtgatttacaaatcaatgaatggaatggcaaaaaacttccgcaattgatgatt
tcagatgtgcatacggatgaatggcaattattcgatttacgtggcggaagcaataaagtt
tctaagtggttgcaaacgattcctattgaagaaacaacttttattgctttcaaaaaagat
acggttgaatacttcaaaacattaattccgaaagaaattactttatataatgaagaaacg
gaacaaacttactcgaaattcttagtgctgctcgacttacctacgcatcaagaacaactt
gcgaatttattgagaacagttgaaccagtgcgaatttatgcgcatttctatgtcgcgaat
cctcatctttttgaaggtatgccgacacgcgaacaattcatttggtattattcattttta
aaacaaagaaaacagtttaatgttcgtcaaaacctaaatgatttagcgaaacataaaggt
tggagccgtgctatgttgattttcatgacacaggtgttttttgaactgaaatttgttaca
atagacgatggtcttgcaaaaattgtagataatccggataagcgtgcgatcgagtctgcg
cttatttacaaagaacgcacggaacaagtggcgcttgaagagaaacttctttatgcgcaa
tataaggatttaagaaattggtttgaacaatgctttacgaaacaaccactttctgaggag
gaaaattaa
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