KEGG   Lysobacter antibioticus 76: LA76x_2742Help
Entry
LA76x_2742        CDS       T04154                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
lab  Lysobacter antibioticus 76
Pathway
lab03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:lab00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    LA76x_2742 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lab03400]
    LA76x_2742 (ligD)
Enzymes [BR:lab01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LA76x_2742 (ligD)
DNA repair and recombination proteins [BR:lab03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     LA76x_2742 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ALN80872
UniProt: A0A0S2FBC9
LinkDB All DBs
Position
complement(3173957..3176509)
Genome map
AA seq 850 aa AA seqDB search
MTLRDYVRKRRFDATPEPDADRGRAGRGRRKAPIFVVQLHHARARHYDFRLEADGVLKSW
AVPKGPSLRAGERRLAVEVEDHPLSYADFEGDIPEGQYGAGHVDIFDHGTWRTDDDALDQ
IAAGKLDFELDGERLHGRFTLVRTRPVGKQQQWLLIKRSDEHARDSDADRMLDEPAAIAQ
PAAPLPKQVAGKSRAASAKARGAGSRGSGVRSSGVWRNVAAKIAGAVAAPMPKDVELQLA
TLRERPPSGSEWQFEVKWDGYRMLAYVQRGVRLQSRNKVDWSERFAHLAEAIAGLSVRSA
ILDGELIASDRSGRSDFGELQRLLESGQLDSLHYVIFDLLYLDGIDLRGAAQAQRRGLLR
EVLAASTSDALAFSEHVEGDAGQVLAASVKAGLEGIICKRADAPYHGGRSQAWIKLKHVA
DEEFIVVGHTPPKHGRQGFGSLLLARPGADGLAYVGRVGSGFSDAALRSLSKRLQALHSE
QAAVELPGHVPFPRRSVRWVAPELVVDVHSRGRGKEGLIRQASFVRLREDKRAADLSAAV
AAAQAEPAPRRARAGRARPLQETAMSDTRLSHPERIVYPVAKISKGEVADYYRAVEAWLL
PELVERPLSLLRCPDGIASACFFQKHHADSLGEGVHPVRLRESAGQADYVYVRDIEGVSA
LVQMNTLEFHPWGAKRQAPDRPDRLVFDLDPAEDIAWSELKRAGREVRDRLAEIGLDSWP
RLSGGKGMHVVVPIRPGPRWAEAKAFSEAFADAMVAQSPLRYVATASKVARKGRIFIDWL
RNARGATSVASWSLRAREGAPVAMPLRWDEFSRARSSTDFDLAKALRRAARLRSDPWEGF
AESRQRLPTI
NT seq 2553 nt NT seq  +upstreamnt  +downstreamnt
gtgactctgcgcgattacgtgcgcaaacgccgcttcgacgccacgccggagccggatgcc
gaccgcggccgcgcaggtcgagggcggcgcaaggcgccgatcttcgtcgtccagttgcac
catgcgcgggcccgccactacgacttccgcctggaagccgatggcgtgctgaagagctgg
gcggtgccgaaggggccgtcgttgcgtgccggcgagcgccgtctcgcggtcgaggtcgaa
gaccacccgctgtcctatgcggatttcgagggagacattcccgaaggccagtacggtgcc
ggccatgtcgacatcttcgatcatggcacctggcgcaccgacgacgacgcactcgaccag
atcgccgccggcaagctcgatttcgaactcgacggcgagcgcctgcacggccgtttcacc
ctggtgcggacccggcccgtcggcaaacagcagcagtggctgctgatcaagcgcagcgac
gagcatgcgcgcgacagcgacgccgaccgcatgctcgacgagcccgccgcgatcgcccaa
cccgcggcgccgctgccgaaacaggtcgccggaaagtcgcgagcggcgagcgccaaggca
cgcggggctgggtcacgcgggtccggggtgcgtagttccggagtctggcgcaacgtcgcg
gcgaagatcgccggtgccgtcgcggcgccgatgccgaaagacgtcgaattgcagctggct
accttgcgcgagcgcccgccgagcggcagcgagtggcagttcgaagtcaagtgggacggc
tatcgcatgctcgcctacgtccagcgtggcgtacgcctgcaatcgcgcaacaaggtcgat
tggagcgagcgcttcgcgcacctggccgaggccatcgctggcctgtcggtgcgcagcgcg
atcctcgacggcgagttgatcgcctccgaccgcagcggccgcagcgatttcggcgagttg
cagcgcttgctcgaatccgggcagttggattcgctgcactatgtgatcttcgacctgctg
tatctggacggcatcgacctgcgcggcgcggcgcaggcgcagcgccgaggcttgctgcgc
gaggtgttggcggcctcgacctcggacgcgctggccttcagcgaacatgtcgaaggcgat
gccgggcaggtgctggcggcgagcgttaaggccggcctggaaggcatcatctgcaagcgc
gccgatgcgccttaccacggtggccgcagccaggcctggatcaagctcaagcacgtcgcc
gacgaggaattcatcgtcgtcgggcatacgccgccgaagcacggccgccaggggttcggc
tccctgctgttggcccggcccggcgccgacggtctggcgtatgtcggccgtgtcggcagc
ggtttcagcgatgcggcgctgcgcagcctgagcaagcgcctgcaggcgctgcacagcgaa
caggcagcagtggaactgcccgggcacgtgccgtttccgcgacgttcggtgcgctgggtc
gcgccggaactggtcgtcgacgtgcattcgcgtggacgcggcaaggaaggcctgatccgc
caggccagcttcgtgcggctgcgcgaggacaaacgggccgccgacctgagcgccgccgtc
gcggccgcgcaggccgagcctgcgccgcgccgcgcccgggcagggcgcgcccgccccctc
caggagaccgcgatgagcgatacccggctcagccatcccgaacgcatcgtctatcccgtc
gcgaagatcagcaaaggcgaggtcgccgattattaccgcgcggtcgaggcctggctgctg
ccggaactggtcgaacgtccgctgtccttgctgcgctgcccggacggcatcgcatcggcg
tgtttcttccagaaacaccatgccgacagcctgggcgagggcgtgcacccggtccgcctg
cgcgagtccgccggccaggccgactacgtctacgtgcgcgacatcgaaggcgtgtcggcg
ctggtgcagatgaacaccctggagttccatccctggggcgcgaaacggcaggcgccggac
cggccggatcggttggtgttcgacctggacccggccgaggacatcgcctggagcgaactc
aagcgggccgggcgcgaagtgcgcgaccggctcgccgaaatcgggctcgacagctggccg
cgcctgtccggcggcaagggcatgcacgtggtggtgccgatccggccaggcccgagatgg
gccgaggccaaggccttcagcgaggccttcgccgacgccatggtcgcgcagtcgccgcta
cgctacgtcgcgacggcatccaaggtcgcccgcaaggggcgcatcttcatcgactggctg
cgcaatgcgcgcggcgccaccagcgtggcgagttggtcgctgcgcgcgcgcgaaggcgcg
ccggtggcgatgccgttgcgctgggacgagttctcgcgtgcgcgttcttcgaccgacttc
gatctggccaaggcattacgtcgcgccgcgcgcctgcgcagcgatccctgggaaggtttc
gccgagagccgacaacgcttgccgacgatatga

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