KEGG   Labrenzia sp. VG12: CHH27_03495
Entry
CHH27_03495       CDS       T04984                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
labr  Labrenzia sp. VG12
Pathway
labr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:labr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CHH27_03495 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:labr03019]
    CHH27_03495 (rnr)
   03016 Transfer RNA biogenesis [BR:labr03016]
    CHH27_03495 (rnr)
Enzymes [BR:labr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     CHH27_03495 (rnr)
Messenger RNA biogenesis [BR:labr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CHH27_03495 (rnr)
Transfer RNA biogenesis [BR:labr03016]
 Prokaryotic type
  tRNA degradation factors
   CHH27_03495 (rnr)
SSDB
Motif
Pfam: RNB CSD2 S1 RNase_II_C_S1 HTH_Crp_2 OB_RNB
Other DBs
NCBI-ProteinID: ASP32422
UniProt: A0A222F1H8
LinkDB
Position
complement(754813..757131)
AA seq 772 aa
MSAKRIKPRKHSNRKHAKVPGEMPSREDILAFVADNPGRAGKREIARHFGIIGGARIHLK
KMLKDLADDGLIEKRNKRMIRPGDLPPVFVAHLAARDRDGELLGTPVDWDDEAGDPPKIL
VLTGKTKATQPGLGDRALIRLTEAETGPEADHVARVIRVLEKRQGAILGILRKRDGNRPP
YLEPIDRKQRELDVDPAEMKEADDGDLVSVQVSRSGRYGHPRASIVERFGSMNSEKAVSE
IALQSHGIPHVFPAAVEAQAEAAKPVEKLGKREDWRQVPLITIDPPDAKDHDDAVYAEPD
EDPQNEGGHIVYVAIADVAHYVTPGSPMDREANLRGNSVYFPDRVIPMLPERISNQLCSL
REKEDKPALAVRMIFDKTGRKTGHTFHRVLMRSAAKLSYLQAQKAIDGVTDEKTETILDG
ILKPLWAAYAVLQKGRDAREPLELDLPERKIKLKADGTVDHVYVPERLDAHKLIEEFMIQ
ANVAAAQTLEQKKTPLLYRIHDASTPEKLESLKDFLSTLNMKLPSSGGLRPSAFNGILAK
VKDSPQAHLVNEVVLRSQAQAEYAPQNIGHFGLNLRRYAHFTSPIRRYADLIVHRGLISA
LGLGNDGLPDGIESKLEAIGAEISGAERRAMLAERDTIDRLIALWMSDQIGATFQGRIAG
VVKSGLFVRLEETGADGFVPASTIGLDYYRYDEGSHALIGDKSGETHQLGDQVEVRLVEA
APFAGALTFELLSHGRIAGKRIRKGAPKARRGPPKGKRNTSSSKNKGRRRTS
NT seq 2319 nt   +upstreamnt  +downstreamnt
ttgagcgcaaaacggataaagccgcgcaaacacagcaatcgtaaacacgccaaggttcca
ggtgagatgccctcgcgagaggatattctcgcctttgtcgccgacaatccgggccgcgcc
ggcaagcgcgagattgcccgtcatttcgggataatcggcggcgcgcgcattcacctgaag
aagatgctcaaggaccttgccgatgacggcctgatcgaaaagcgcaacaagcgcatgatc
cggcccggcgacctgccaccggtttttgtcgctcatctggcggcccgtgaccgcgatggc
gaattgctgggcacgcccgttgactgggacgacgaggccggcgacccgcccaagatcctt
gttctgaccggcaagaccaaggccacccagcccggtctcggcgaccgggcgctgatccgg
ctgacggaggctgaaaccgggccggaggctgaccatgtggcccgcgtcattcgagtcctg
gaaaagcgtcagggcgccattctcggcatcttgagaaaacgggacggcaaccgcccgccc
tatctcgagccgatcgacaggaagcagcgcgaactggatgtcgacccggccgagatgaag
gaagcggacgacggggacctggtaagtgtccaggtcagccgttccggccggtatggccat
ccgcgcgcgtcgattgtcgagcgtttcggctcgatgaactccgagaaggccgtttccgaa
atcgcgcttcagtcgcatggcatcccgcatgttttcccggcagccgtcgaggcacaggcc
gaagcggcaaaaccggtggagaagctcggcaagcgtgaggactggcgccaggtaccgctg
atcaccatcgacccgccggacgccaaggaccatgacgacgccgtctatgcggaaccggat
gaagacccgcagaacgaaggcgggcacattgtctatgtcgccattgccgacgtcgcacat
tacgtgacaccgggctcaccgatggaccgcgaggccaacctgcgcggcaattcggtctat
ttcccggaccgggtgatcccgatgctgccggagcggatctccaaccagctgtgttcgctc
agggaaaaggaagacaagcccgcgcttgctgtgcgcatgatcttcgacaagaccggccgc
aagaccggtcacacgtttcatcgcgtgctgatgcgctcggccgcaaaactctcctacctg
caggcacaaaaggcaatcgacggcgtcaccgacgagaagaccgaaacgatcctcgacggc
atcctgaagccgctctgggctgcctatgcggtgctccagaaagggcgtgatgcccgcgaa
ccgctggaactcgacctgccggagcgcaagatcaagctgaaggcagacggtactgtcgat
cacgtctatgtgccggagcggctggacgcgcacaagctgatcgaagaattcatgatccag
gcgaatgttgcggcagcgcaaacgctggagcagaagaaaacacccctgctctaccggatc
catgacgcctccacgccggaaaaactggaaagcctgaaagacttcctgtcgacgctgaac
atgaaactgccctcctcgggcggtctcagaccgtccgcctttaacggcattctggccaag
gtcaaggacagcccacaggcccatctcgtcaatgaagtcgtgctgcggagccaggcgcag
gcggaatatgccccgcagaatatcggccatttcggcctcaacctgcggcgctatgcccat
ttcacctctccgatccgccgttatgcagacctgatcgtgcaccggggtctgatctcggcg
ctcggattgggcaatgacggcctgccggatggcatcgaaagcaagctggaagccatcggc
gcggaaatctcgggtgctgagcgccgcgcgatgctggccgaacgcgatacgatcgaccgg
ctgattgcgctgtggatgagcgaccagatcggcgcaaccttccaggggcgcatcgccggc
gtggtcaagtccggtctgttcgtgcgcctggaagagaccggggcagacggcttcgtgccg
gcgtccaccatcggcctcgactactatcgctatgacgaagggtcgcatgccctgataggt
gacaaatccggcgagacccaccaacttggcgatcaagtggaggtccggcttgtggaagcg
gccccctttgcaggcgcgttgacctttgaactgctcagccacgggcggattgccggcaaa
cgcattcgcaagggcgccccgaaggcccgtcgcggtccgccgaaaggcaaacgcaacacc
tcctcctcgaagaacaagggtcgaaggaggacttcgtga

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