Labrenzia sp. VG12: CHH27_03495
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Entry
CHH27_03495 CDS
T04984
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
labr
Labrenzia sp. VG12
Pathway
labr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
labr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHH27_03495 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
labr03019
]
CHH27_03495 (rnr)
03016 Transfer RNA biogenesis [BR:
labr03016
]
CHH27_03495 (rnr)
Enzymes [BR:
labr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CHH27_03495 (rnr)
Messenger RNA biogenesis [BR:
labr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CHH27_03495 (rnr)
Transfer RNA biogenesis [BR:
labr03016
]
Prokaryotic type
tRNA degradation factors
CHH27_03495 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
HTH_Crp_2
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
ASP32422
UniProt:
A0A222F1H8
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All DBs
Position
complement(754813..757131)
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AA seq
772 aa
AA seq
DB search
MSAKRIKPRKHSNRKHAKVPGEMPSREDILAFVADNPGRAGKREIARHFGIIGGARIHLK
KMLKDLADDGLIEKRNKRMIRPGDLPPVFVAHLAARDRDGELLGTPVDWDDEAGDPPKIL
VLTGKTKATQPGLGDRALIRLTEAETGPEADHVARVIRVLEKRQGAILGILRKRDGNRPP
YLEPIDRKQRELDVDPAEMKEADDGDLVSVQVSRSGRYGHPRASIVERFGSMNSEKAVSE
IALQSHGIPHVFPAAVEAQAEAAKPVEKLGKREDWRQVPLITIDPPDAKDHDDAVYAEPD
EDPQNEGGHIVYVAIADVAHYVTPGSPMDREANLRGNSVYFPDRVIPMLPERISNQLCSL
REKEDKPALAVRMIFDKTGRKTGHTFHRVLMRSAAKLSYLQAQKAIDGVTDEKTETILDG
ILKPLWAAYAVLQKGRDAREPLELDLPERKIKLKADGTVDHVYVPERLDAHKLIEEFMIQ
ANVAAAQTLEQKKTPLLYRIHDASTPEKLESLKDFLSTLNMKLPSSGGLRPSAFNGILAK
VKDSPQAHLVNEVVLRSQAQAEYAPQNIGHFGLNLRRYAHFTSPIRRYADLIVHRGLISA
LGLGNDGLPDGIESKLEAIGAEISGAERRAMLAERDTIDRLIALWMSDQIGATFQGRIAG
VVKSGLFVRLEETGADGFVPASTIGLDYYRYDEGSHALIGDKSGETHQLGDQVEVRLVEA
APFAGALTFELLSHGRIAGKRIRKGAPKARRGPPKGKRNTSSSKNKGRRRTS
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgcaaaacggataaagccgcgcaaacacagcaatcgtaaacacgccaaggttcca
ggtgagatgccctcgcgagaggatattctcgcctttgtcgccgacaatccgggccgcgcc
ggcaagcgcgagattgcccgtcatttcgggataatcggcggcgcgcgcattcacctgaag
aagatgctcaaggaccttgccgatgacggcctgatcgaaaagcgcaacaagcgcatgatc
cggcccggcgacctgccaccggtttttgtcgctcatctggcggcccgtgaccgcgatggc
gaattgctgggcacgcccgttgactgggacgacgaggccggcgacccgcccaagatcctt
gttctgaccggcaagaccaaggccacccagcccggtctcggcgaccgggcgctgatccgg
ctgacggaggctgaaaccgggccggaggctgaccatgtggcccgcgtcattcgagtcctg
gaaaagcgtcagggcgccattctcggcatcttgagaaaacgggacggcaaccgcccgccc
tatctcgagccgatcgacaggaagcagcgcgaactggatgtcgacccggccgagatgaag
gaagcggacgacggggacctggtaagtgtccaggtcagccgttccggccggtatggccat
ccgcgcgcgtcgattgtcgagcgtttcggctcgatgaactccgagaaggccgtttccgaa
atcgcgcttcagtcgcatggcatcccgcatgttttcccggcagccgtcgaggcacaggcc
gaagcggcaaaaccggtggagaagctcggcaagcgtgaggactggcgccaggtaccgctg
atcaccatcgacccgccggacgccaaggaccatgacgacgccgtctatgcggaaccggat
gaagacccgcagaacgaaggcgggcacattgtctatgtcgccattgccgacgtcgcacat
tacgtgacaccgggctcaccgatggaccgcgaggccaacctgcgcggcaattcggtctat
ttcccggaccgggtgatcccgatgctgccggagcggatctccaaccagctgtgttcgctc
agggaaaaggaagacaagcccgcgcttgctgtgcgcatgatcttcgacaagaccggccgc
aagaccggtcacacgtttcatcgcgtgctgatgcgctcggccgcaaaactctcctacctg
caggcacaaaaggcaatcgacggcgtcaccgacgagaagaccgaaacgatcctcgacggc
atcctgaagccgctctgggctgcctatgcggtgctccagaaagggcgtgatgcccgcgaa
ccgctggaactcgacctgccggagcgcaagatcaagctgaaggcagacggtactgtcgat
cacgtctatgtgccggagcggctggacgcgcacaagctgatcgaagaattcatgatccag
gcgaatgttgcggcagcgcaaacgctggagcagaagaaaacacccctgctctaccggatc
catgacgcctccacgccggaaaaactggaaagcctgaaagacttcctgtcgacgctgaac
atgaaactgccctcctcgggcggtctcagaccgtccgcctttaacggcattctggccaag
gtcaaggacagcccacaggcccatctcgtcaatgaagtcgtgctgcggagccaggcgcag
gcggaatatgccccgcagaatatcggccatttcggcctcaacctgcggcgctatgcccat
ttcacctctccgatccgccgttatgcagacctgatcgtgcaccggggtctgatctcggcg
ctcggattgggcaatgacggcctgccggatggcatcgaaagcaagctggaagccatcggc
gcggaaatctcgggtgctgagcgccgcgcgatgctggccgaacgcgatacgatcgaccgg
ctgattgcgctgtggatgagcgaccagatcggcgcaaccttccaggggcgcatcgccggc
gtggtcaagtccggtctgttcgtgcgcctggaagagaccggggcagacggcttcgtgccg
gcgtccaccatcggcctcgactactatcgctatgacgaagggtcgcatgccctgataggt
gacaaatccggcgagacccaccaacttggcgatcaagtggaggtccggcttgtggaagcg
gccccctttgcaggcgcgttgacctttgaactgctcagccacgggcggattgccggcaaa
cgcattcgcaagggcgccccgaaggcccgtcgcggtccgccgaaaggcaaacgcaacacc
tcctcctcgaagaacaagggtcgaaggaggacttcgtga
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