Labrenzia sp. VG12: CHH27_06265
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Entry
CHH27_06265 CDS
T04984
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
labr
Labrenzia sp. VG12
Pathway
labr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
labr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CHH27_06265 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
labr03400
]
CHH27_06265 (mfd)
Enzymes [BR:
labr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHH27_06265 (mfd)
DNA repair and recombination proteins [BR:
labr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CHH27_06265 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
AAA_16
SecA_DEAD
UB2H
RecG_dom3_C
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASP32901
UniProt:
A0A222F3G5
LinkDB
All DBs
Position
complement(1369658..1373143)
Genome browser
AA seq
1161 aa
AA seq
DB search
MFDRLLKDRANVTLAGVPDGAESFALARLLRESNEDGLSLVFIARDATRMAMITEALGFF
DPTVDVLQLPAWDCLPYDRVSPNTAISARRLLALGQLARGIKPGRKTVLLTTLNAVLQRM
PERSFMADQTFSMAPGNQVDMEAISGWMERNGFSRTPTVRETGEYAVRGGIVDLFAPGSE
EPVRLDFFGDTLESIRSFNAETQRTSKQLKRLDLVPMSEVVLSEEAISRFRRSYLASFGA
ASREDVLYQSISDGRRYAGMEHWLPLFHERLETLFDYIGETPVVLDASAADAVRERSEQV
QEYYQARQEAREMGTGAGNVPYMPVEPASLYLSEGEWTAAVADRATAALDSFTPPPGSGK
TVIELEGRQGRSFAAERAAGDVNIFDALTTHVRELQKNGKRTVIACWSEGSRDRLGQILG
DHGLGAVQEVETLAQIADLPAKTTALCILGIEHGFELKDIAFIGEQDILGDRLVRKSRRK
AKGANVITEATGLSEGDLVVHVEHGIGRFIGLKTIEAVGAPHDCLELQYAGGDKLYLPVE
NIELLSRYGSEDQEAQLDKLGGGAWQARKAKLKKRILEIADGLIKTAAERALKTAPVVET
PEGVYDEFATRFPYEETEDQLTAIDAVFDDLAAGRPMDRLVCGDVGFGKTEVALRAAFIA
AMSGRQVAVVVPTTLLARQHFRTFSERFHGLPINVAHASRLVPARQLTQTKKGIADGSVD
IVVGTHALLGKSIEFRDLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQL
ALTGVRELSLIATPPVDRLAVRTFVSPFDPLVVREALLREHYRGGQSFYVCPRLSDLAER
REFLEEQVPELKVAVAHGQMPPGELEDVMNAFYEGKYNVLLSTTIVESGLDIPTANTLIV
HRADMFGLAQLYQLRGRVGRSKTRAYALFTVPANKTLTATAERRLKVLQSLETLGAGFQL
ASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAQLKDGGADFGDEQWSPQINIG
TPVLIPEDYVGDLQLRLQLYRRLGDVTEAEEIDAFGAELIDRFGPLPDEVQHLLKIVYIK
GLCRKANVEKVDAGPKGIVIAFRNSEFANPAGLVSYIAEQGVLAKIRPDQKIVLTRDWEK
TDSRLKGTATVLTKLARLAAA
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgacaggctgctgaaagaccgcgccaacgtcacgcttgccggcgtgccggacggg
gctgaaagctttgcgctggcgcgtttgctgcgcgagagcaacgaggatggcctgtcgctt
gtgtttatcgcccgtgacgcgacccgcatggcgatgatcacggaagcgctcggttttttc
gatccaaccgttgatgtgcttcagcttccggcctgggactgtctgccctatgaccgggtg
tctcccaatacggccatcagtgcgcggcggctgctggcgctcgggcagcttgcgcgcggg
atcaaacccggccgcaagaccgtgttgctgacaaccctgaacgccgtccttcagcgcatg
cctgaacggtccttcatggctgaccagacgttttccatggcgccgggcaaccaagtggac
atggaagcgatatccggctggatggagcgcaacgggttttctcgaaccccgaccgtgcgc
gagaccggtgaatatgctgtgcgcggcggcatcgtcgacctgtttgcgcccggatcggag
gaaccggtccggctcgatttctttggtgacacgctggaatcgatccgctcgttcaatgcc
gagacgcagcgcacgtcaaagcagctcaagcgcctcgacctggtaccgatgagcgaagtg
gtcttgtcggaggaggccatttcgcgcttccgccgctcctacctggccagttttggtgcc
gccagccgcgaagacgtgctttatcagtcgatcagcgacggtcgccgctatgcggggatg
gaacactggctgcccctgtttcacgaacggcttgaaacacttttcgactatatcggcgag
acaccggtggtgctggatgcgagcgccgcggacgcggtgcgtgaacgttccgagcaggtt
caggagtattaccaggcccgtcaggaagcgcgcgaaatgggcacgggcgccggaaacgtc
ccttacatgccggtcgagccggcaagcctctatctctccgaaggcgaatggacggcggct
gtcgcggaccgggcaactgctgcgctcgactcgtttacgccgccaccgggcagcggcaag
accgtcattgaactggaaggccggcaggggcgcagctttgccgctgagcgggccgctggt
gatgtcaatatcttcgatgccctgacgacccatgtccgggagttgcagaagaacggcaag
cgcacggtaatcgcctgctggtcggaaggctcccgcgaccggcttgggcagatcctgggt
gatcatggccttggcgcggtacaggaagtcgaaacccttgcccagatcgcagatctgcct
gccaaaaccacggccctgtgcattctcggcatcgaacacgggttcgaactgaaggacatc
gcctttatcggcgagcaggacatcctgggggaccggctggtgcgcaagtcgcgccgcaag
gccaagggcgccaatgtcatcaccgaggcgaccggcctgtcggaaggcgatctggttgtc
catgtcgaacacggtatcggccggttcatcggcctgaagaccatcgaggcagtcggcgcc
ccgcatgattgtctggagttgcaatatgcgggcggtgacaagctctacctgccggtcgag
aatatcgagcttttgtcgcgctatggttcggaagaccaggaagcccagctcgacaagctg
ggcggcggcgcctggcaggcgcgcaaggccaaactcaagaaacgcatccttgagattgcc
gacggcttgatcaagacggcggcggaacgggcgctcaagacggcgccagtggtggagacc
ccggaaggggtctacgatgaattcgcgacccgttttccgtacgaggaaaccgaggaccag
ctcaccgccatcgatgcggtcttcgacgatctggctgccggccgcccgatggaccggctg
gtctgcggcgatgtcggcttcggcaagacggaagtggcgcttcgagcggcgttcattgcc
gcgatgtccggccgccaggttgccgtggtggtgccgacgaccctgctggcacgccagcat
ttccggaccttctccgagcgattccatggcctgccgatcaatgtggcccatgcttcccgg
ctggtgccggcccggcaactgacccagaccaagaagggcattgccgatggttcggtcgac
attgttgtcggcacgcatgcgctgctcggcaaatccatcgagttccgggatctcggcctg
ctgatcatcgacgaagagcagcatttcggtgtcaagcacaaggaacggctgaaggaactg
aagtcggacgtccatgtgctgaccctgtcggcgaccccgatcccgcggaccttgcagctc
gccctgacgggtgtccgcgagctgtcgctgatcgcgacaccgccggtggaccgtctggct
gtgcgcacgtttgtctctccgtttgatccgctggtggtgcgcgaagccttgctgcgcgaa
cattatcgcggtgggcagagtttttatgtctgtccgcgtctctccgatctcgccgagcgg
cgggaattcctggaagaacaggtaccggagctgaaggtggcggttgcccacggccagatg
ccgccaggcgagctggaagacgtgatgaacgccttttatgaaggcaagtacaacgttctc
ctgtcgaccacgattgtcgaatcggggctcgatattccgacagccaacacgctgatcgtg
caccgggccgacatgttcggcctggcgcagctctaccagctgcgcggccgtgtcggacgc
tccaagacgcgggcctatgcgctcttcacggtgccggccaacaaaaccctgacggcaaca
gccgaacggcgcctgaaggtgctgcagtcgctggaaacactcggggccggtttccagctg
gccagccacgatctcgacattcgcggggcagggaacctgcttggcgaagagcagtccggc
catatcaaggaagtcggtttcgaactctaccagcagatgctggaagaggccgtcgcccag
ttgaaggacggtggtgcggatttcggcgacgaacaatggtcaccgcagatcaatatcggc
acgcctgttctgatcccggaagactatgtcggcgatctgcagctgcgcctgcagctctac
cggcgcctgggcgatgtcaccgaagcggaagaaatcgatgcttttggcgcggaactgatc
gaccgtttcggcccgctgccggacgaggtccagcatcttctgaagatcgtctatatcaag
ggcctctgccgcaaggccaatgtcgaaaaagtcgatgccggaccaaaaggcattgtcatt
gccttccgcaactccgaattcgccaacccggctggtcttgtctcctacattgccgaacag
ggcgtgctcgccaagatccgcccggaccagaagatcgttctaacgcgggactgggaaaaa
acggattcgcggctgaagggaacggcaacggtgctgaccaagctggctcggctggcggcg
gcttag
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