Lactobacillus acidophilus NCFM: LBA0056
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Entry
LBA0056 CDS
T00231
Symbol
exoA
Name
(GenBank) exodeoxyribonuclease A
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
lac
Lactobacillus acidophilus NCFM
Pathway
lac03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LBA0056 (exoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lac03400
]
LBA0056 (exoA)
Enzymes [BR:
lac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
LBA0056 (exoA)
DNA repair and recombination proteins [BR:
lac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
LBA0056 (exoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
SpoU_sub_bind
Motif
Other DBs
NCBI-ProteinID:
AAV41960
UniProt:
Q5FMW4
LinkDB
All DBs
Position
51696..52523
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AA seq
275 aa
AA seq
DB search
MILISWNIDSLNAALTGTSARAEETRQVLEKIHAKNPDIIAIQETKLKATGPTKKHQEIL
AEKFPEYNYVWRSSEEPARKGYAGTMYLYKKDLTPIVSYPVIGAPEPMDCEGRIITLEFN
DFYVTQVYTPNSGSGLKRLSDRQVWDQKYTKYLQELDKHKPVLASGDYNCAHTEIDLKHP
NNNHHSAGFTDEERSGFTNLLNAGFTDTFRKVHGNITDVYSWWAQRVKTAKINNSGWRID
YWLVSNRIANKVVRSEMIDTEKRADHCPILLEINL
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgattttaatttcatggaatattgattctttaaatgcggctttaacgggaacttcagct
agagcggaagaaaccagacaggtattagaaaaaattcacgctaaaaatccagatattatt
gccattcaagaaacaaaattaaaggcaactggcccaacaaaaaagcatcaggaaatttta
gcagaaaaatttcctgaatataattatgtttggcgttcttctgaagagcctgctagaaaa
ggctatgcggggactatgtatttatataaaaaggatttaaccccgattgtttcttatccg
gtaattggtgcaccagaaccaatggattgtgagggacgtattataactctagaattcaat
gacttttatgtgacacaagtttatacgcccaattccggtagtggattgaagagattaagt
gaccgccaagtttgggatcaaaagtatactaaatacttacaagaattagataaacacaag
ccagttttggcaagcggtgattataactgtgctcatactgagattgatttgaagcatcca
aataataatcatcattctgccggttttactgatgaggaaagatctgggtttactaattta
ctaaatgctggttttacagacacttttagaaaagttcacggtaatattacggatgtatat
tcttggtgggctcaacgtgtaaaaaccgctaaaataaacaactctggatggagaattgat
tattggcttgtatctaataggattgctaataaggtggttcgctcagaaatgattgatacc
gaaaaaagagcagaccattgtccaattttgcttgaaattaacctttaa
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