Lactobacillus acidophilus NCFM: LBA1243
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Entry
LBA1243 CDS
T00231
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lac
Lactobacillus acidophilus NCFM
Pathway
lac03410
Base excision repair
lac03430
Mismatch repair
lac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LBA1243 (recJ)
03430 Mismatch repair
LBA1243 (recJ)
03440 Homologous recombination
LBA1243 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lac03400
]
LBA1243 (recJ)
DNA repair and recombination proteins [BR:
lac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LBA1243 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LBA1243 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LBA1243 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
ssDNA-exonuc_C
RecJ_OB
DHHA1
DUF5759
Tudor_FRX1
Motif
Other DBs
NCBI-ProteinID:
AAV43076
UniProt:
Q5FJP8
LinkDB
All DBs
Position
complement(1218482..1220755)
Genome browser
AA seq
757 aa
AA seq
DB search
MKWQKRITKELDSDLVDKYQLSSLSAQLFALRDINTDEKLDFWFNATEENLANPLLMHDM
EKAVERINQAIDNGEKITIYGDYDADGITATAIMTETLSILGADVHYFIPDRFKDGYGPN
IERYKEIVADGTKLIITVDNGVTGIDEVKYAKENGVDTIITDHHTFQEKVPDSYAVVHCN
YPGQKYPFDDYCGAGVAYTICRELMQDTMPELLDLAMIGTLGDMVKVTGEGHIIVKRGLE
ILNQTTRPGLQALIKNAGLTLGSINETDVGFNICPRLNAVGRLANANLAVELLLSDDDIA
AQKIADQIEELNNQRKELTTDVYEKCMSIIRENSWQKQNTLVLYDPEFHEGVLGLVANKI
VEKTHKPTIVLTKNDVGEVKGSGRAFNGFNLFNALNPLKDELFTKFGGHDFACGLSMQEN
KIDTLRQKLESSYQVNGESESKGYDLELPLNDLTPQTLAQINQVGPFGTGDPQPIFSISD
PTITQFYKIGKDKNHVKLTASKKGGSLAIVGFNKDFLNNNLLPFISKIFIQLTLNTYRKQ
ISLQGIIEGIEFASPKLAVPTPVIDLRNEKFVMGFADRYLLFDKKNIPIVKNRLQISDDK
ISLVKDYDQSGETVALLDVPRNQIELNEALEKNYQQIYLRFLLDQLPVEHIPAKGYFGRV
LKYIYAHPTLKPDDYRTVAPYLGLDYDSVLFILRVFFELGFVKLHDGKLIGEENPKKQPL
TSSKYLMATESQIKFVDQLRNMPTQKLITYVNNHSNN
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgaaatggcaaaaaagaatcactaaagaattagattctgatttagtagataagtatcag
cttagctcgctttcggcacaattatttgctttacgtgatattaatacagatgagaagctg
gatttttggtttaacgcaacagaagaaaatttggctaatccattattgatgcatgacatg
gaaaaggcggtagaacgtattaatcaagcaattgataatggtgaaaaaattacgatatat
ggtgattatgatgctgatggaattacagctactgccattatgactgaaacactaagcatt
ttaggagcagatgtacattattttattccagatcgttttaaagacggctatggacctaat
attgaacgatataaggaaatagtagctgatggtactaagttaattattactgtagataac
ggtgtaacaggaatcgatgaagttaaatatgccaaagaaaatggtgtagatacaattatt
acggaccaccatacttttcaggaaaaagttccagattcatatgctgttgttcattgtaat
tatcctggtcagaaatatccttttgatgattattgtggtgctggagttgcctatactatt
tgccgtgaattaatgcaagatactatgccagaattacttgatttagcgatgattggtact
ctcggcgatatggttaaagttacaggcgaaggtcatatcatcgttaaacgtggtcttgag
attcttaatcaaaccactagaccagggttacaagcattaataaaaaatgcaggtttaact
ttgggttcgattaatgaaactgatgtcggttttaatatttgtccacgattgaatgccgta
ggccgcttagctaatgcaaatttggcggttgaacttttattaagtgacgatgatattgca
gcccaaaagatagctgatcaaattgaagaattaaacaatcagcgaaaagaattaactaca
gacgtatatgaaaaatgtatgtcaattatccgtgaaaatagttggcaaaaacaaaatacg
cttgtattgtatgatcctgagtttcatgaaggtgtattaggattagttgctaataaaata
gttgaaaaaacacataaacctacgattgttttgactaagaatgatgtgggggaagttaaa
ggatccggacgtgcattcaatggttttaatttatttaatgcacttaatccattgaaagat
gaattatttactaaatttggcgggcatgattttgcttgtggattatctatgcaagaaaat
aaaattgacactttgcgtcaaaaactggaatctagttatcaagtaaatggggagtcagaa
agtaaaggatacgatttggagcttcctttaaacgacttaactccacaaactttagcacaa
attaatcaggtgggcccctttggcaccggtgatcctcaaccaatttttagtatttctgat
ccaacaattacacaattttataaaattggtaaagataaaaatcatgttaagttaactgct
tctaaaaagggtggaagtttagcaatagttggttttaataaagactttttgaataataat
ttgctgccatttatctctaagatcttcatccaattgacgctaaatacttatcgaaaacaa
atatcattacagggaattatcgaaggaatagagtttgcttcacccaaattagcagtacct
acaccggttattgatttacgaaatgaaaaatttgtaatgggttttgcagatcgttattta
ctttttgacaagaaaaatattccaattgttaaaaatagactgcaaattagtgatgataaa
attagtcttgtaaaggattatgatcagtctggagaaacagtagctttacttgatgtacct
cgtaatcaaatagagctaaatgaagcacttgaaaaaaattatcagcagatttatttgcgt
tttttgttagatcaattgccagtcgaacatattccggctaaaggttatttcggcagagta
ttgaagtatatttatgctcatcctacattaaagccagatgattatcgtaccgtagcccca
tatttagggttagattatgatagtgtattatttatattgcgtgttttctttgaattaggc
tttgttaaactgcatgatggaaaattgattggggaggaaaaccctaagaagcaaccactg
acatcttcaaaatatttaatggcgactgaatcacaaattaaatttgtagatcaattaaga
aatatgccaacacaaaaattaattacatatgttaataatcattcaaataattag
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