Lactobacillus acidophilus NCFM: LBA1676
Help
Entry
LBA1676 CDS
T00231
Name
(GenBank) probable ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lac
Lactobacillus acidophilus NCFM
Pathway
lac03420
Nucleotide excision repair
lac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LBA1676
03430 Mismatch repair
LBA1676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lac03400
]
LBA1676
Enzymes [BR:
lac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LBA1676
DNA repair and recombination proteins [BR:
lac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LBA1676
MMR (mismatch excision repair)
Other MMR factors
LBA1676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
Viral_helicase1
SLFN-g3_helicase
NACHT
AAA_30
DUF6852
DEAD
UL11
Motif
Other DBs
NCBI-ProteinID:
AAV43488
UniProt:
Q5FII6
LinkDB
All DBs
Position
complement(1695808..1697871)
Genome browser
AA seq
687 aa
AA seq
DB search
MATAKTESKEKEFEQKYLDNVMGQIKKQEKNLKQSIKSAEGEARELNSHFFDDVKLDYDG
YSTSMETALSIHQQQQLLSEREHAWQHSAKQLDTVERLEKKPYFARIDFQEQGEKKPETI
YIGLGSFADKDDHFLIYDWRAPISSIYYDGKLGKVSYNSPEGEITVDMTKKRQFMIENGE
IVNMFDTNESIGDQMLLEVLSEKSSTQMKSIVTTIQQEQNKIIRNTSADLLFVQGAAGSG
KTSAILQRIAFLLYRYRGNLTSSDVIMFSPNQLFNDYIKNVLPEMGEQNMVQMTYWQFVS
RRLPGMTVENLFDQFEDNRADTNISKFKDSVNFFNLLTRYAKHLNQRGVVFKNIYFRDKK
KPYFDKEKIKEIYYSFNSNYTLANRIEATREELIKMLNRKVTPETKKAWVSRTIEGMSQE
QLNELYDRPDQEFESEAKEEAFLGRKIVLQSLKGVHKRILHNNFINMRAQYLSFLRAVPK
MIDLSKWGIDVDEWLAHVEDVKNNFKKHSISMSDVSAYLYLYDMVTGRRTNYEMRYAFVD
EIQDYTPFQLAYLKYNFPRAKFTMLGDLNQAIFTKDESRSLLKQISGLFDPEKTDVVQLT
KSYRSTKELTDFTKQILRQGEKIESFNRKGPKPVIWGRDSEEKAINVLKKVLEDNEEHKL
TTAVITKDLASAKKVHKELAKKGKKLR
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctacagccaaaaccgaaagtaaagaaaaagaatttgaacaaaagtaccttgataat
gtgatgggacaaatcaagaagcaagaaaaaaatttgaaacagtcaattaaatcagctgaa
ggtgaagcaagagagcttaattcacacttctttgacgatgttaagcttgattatgatggc
tactctacttcaatggaaaccgcgctgtcaattcaccaacagcaacaattattaagcgaa
cgtgaacatgcttggcaacactctgctaagcagttagacacagtagaaagattagaaaaa
aagccttattttgcacgaatcgattttcaagaacaaggcgaaaaaaagccagaaacaatt
tatattggtttaggatcttttgctgataaagatgatcatttcttaatttatgactggcgt
gctccaatttcatcaatttattatgatggtaaattaggtaaagtttcttataattcaccc
gaaggtgaaattacggttgatatgaccaagaaacgccaatttatgatcgaaaacggtgaa
atcgttaatatgtttgatactaatgaatccattggtgatcaaatgttattagaggtttta
tcagaaaaatctagtacacaaatgaagtcgatcgttacaacgatccaacaagaacaaaac
aagattattagaaatactagtgctgatttattatttgttcaaggtgcagctggttctggt
aagactagtgcaattttgcaaagaattgcgttcttgctatatcgctatcgtggtaattta
acttctagtgatgtaattatgttcagccctaaccaattatttaatgattatattaaaaat
gttctgcctgaaatgggtgaacaaaatatggtccagatgacttactggcaatttgtttca
cgtagactgcctggaatgactgtcgagaatttattcgatcaatttgaagataacagagct
gacaccaatattagcaagtttaaggattcagttaatttctttaacttgttaacacgttat
gctaagcatttgaatcagcgtggggtagttttcaagaatatttacttccgtgataaaaag
aaaccttattttgataaagaaaagatcaaggaaatttattattcatttaattcaaactac
actttagctaatcgaattgaagcaacacgcgaagaattaatcaagatgcttaaccggaag
gtgacaccagaaactaaaaaagcttgggtatcacgaacgattgagggtatgagccaagaa
caattaaatgaactgtatgatcgtccagaccaagaatttgaatctgaagcaaaagaagaa
gcattcttgggtagaaagattgtacttcaatcattgaaaggcgttcacaagcgaattttg
cacaataattttattaatatgcgtgcacaatatcttagctttttgcgtgctgtacctaag
atgattgatctatctaagtggggaattgatgtagacgagtggcttgctcatgttgaagac
gtgaagaataattttaaaaagcacagtatttcaatgagtgatgtttctgcatatctatat
ctttatgacatggtaactggtcgtagaactaattatgaaatgcgctatgcctttgtcgat
gaaattcaagattataccccgttccaattagcctaccttaagtataatttcccaagagct
aaatttacgatgttaggggatttgaaccaagctattttcactaaggatgaaagtcgtagt
ttacttaagcagatttctggcttatttgatccagaaaaaactgatgtggtgcaacttact
aagtcatatcgttctaccaaagaattgaccgattttactaagcaaattttgcgtcaaggc
gagaagattgaatcatttaatcgtaaaggaccaaagcctgttatttggggtagagatagc
gaagaaaaagcaattaatgtgttaaagaaagttttagaagataacgaagaacacaaatta
actactgcggtgattaccaaggatttagctagcgctaaaaaagttcataaagagcttgct
aaaaagggaaaaaaactacgttaa
DBGET
integrated database retrieval system
