Lactobacillus acetotolerans: LBAT_0331
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Entry
LBAT_0331 CDS
T03976
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lae
Lactobacillus acetotolerans
Pathway
lae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBAT_0331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lae03019
]
LBAT_0331
03009 Ribosome biogenesis [BR:
lae03009
]
LBAT_0331
Enzymes [BR:
lae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LBAT_0331
Messenger RNA biogenesis [BR:
lae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LBAT_0331
Ribosome biogenesis [BR:
lae03009
]
Prokaryotic type
rRNA helicases
LBAT_0331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAQ56720
UniProt:
A0A0D6A2I7
LinkDB
All DBs
Position
330432..331928
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AA seq
498 aa
AA seq
DB search
MKFSELGLNDALLKAIKRAGFEETTPIQEQTIPLALEGKDVIGQAQTGTGKTAAFALPIL
QNLEKQHKTIQALVIEPTRELAIQTQEELYRLGRDEHARVQVVYGGADIRRQIRSIKHNV
PAILVGTPGRLLDHLKRKTVDLEDVNTIVLDEADEMLDMGFIKDIESILSYVKNRKQTLL
FSATIPQPILKISKKFMHDPEIVRIKAKDLTADLIDQYFVRAKDSEKFNIMCRLIDVEDP
DLALIFVRTKRRVDEVTRGLQARGYNAAGIHGDLSQARRMTVLKRFRAGKLDILVATDVA
ARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGNNGMSVTFVTPNEIGYMRTIEQLTK
KKMSPLQPPTDDEALHGQLKAAKSQIADLMKDDLSKYTQDANDLLDSYSAVDLVSAFLKN
LSKNSSDVKVKISSEKPLPYKGHGHGRGGHRGYGGHGRGRRGYSHNSYHGRRNGNYHNNH
SRHGSGHGGKFVIKNKKD
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
gtgaagttttcggaattaggattaaatgatgcccttcttaaggcaattaaacgtgcgggt
tttgaagagaccacgcccattcaagagcaaactattccgcttgccttagaaggcaaagac
gtaattggtcaagcacaaacaggtactggtaagacagctgcctttgctttaccaatttta
caaaatttagaaaaacaacataagacgattcaagcattggttattgaaccaacacgtgaa
ttagccattcaaacccaagaagaactctaccgtttaggccgcgatgaacatgcccgtgtt
caagtagtttatggtggggctgatattcggcggcaaatccgttcaattaagcataatgtt
cctgctattttggtaggtacacctggtcggcttttagatcaccttaagcgcaagaccgtt
gacttagaggatgtcaatactatcgttttagatgaagctgacgaaatgctcgacatgggc
tttattaaggatattgaaagtatcttaagttacgttaagaaccgtaaacaaaccttactc
tttagtgctacgattccacaacctattttaaagatcagcaaaaaatttatgcatgatcct
gaaatcgtccgaattaaggctaaggatttaactgctgatctgattgatcaatactttgtt
cgtgctaaggattcagaaaaattcaacattatgtgtcgtttgattgatgttgaagaccca
gatttggctcttatctttgttagaaccaagcggcgtgttgatgaagtaacccgtggatta
caagctcgtggttataacgcagctggtattcatggggacttgtcacaagcacggagaatg
accgttctgaaacgcttccgtgctggtaagttggatattttagtagctactgatgttgct
gcccgtggacttgatatttcaggagtaacgcacgtatacaactacgatatcccacaggat
ccagattcttacgtccaccgtattggtcgtaccggtcgtgccggtaataatggtatgtcc
gtaacttttgtcacaccaaatgaaattggctatatgcggacaattgaacaattaactaag
aagaagatgtccccacttcaaccacctacagatgatgaggcacttcacggtcaattgaag
gctgcaaagtcacaaattgcagatttgatgaaggatgatctgagtaaatatactcaagat
gccaatgatctgctcgatagctactctgctgttgacctagtatctgcatttttgaagaat
ttgtctaagaattcatcagatgttaaggtgaagattagttcagaaaagccgttgccttat
aagggtcacggtcacggacgcggtggtcaccgtggatatggtggtcacggtcgtggcaga
cgaggctacagccataatagttatcatggccgtcgaaatggtaattaccataataaccat
tctcgtcatggttccggtcatggtggtaaatttgtgattaaaaataagaaagattaa
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