Lacinutrix sp. 5H-3-7-4: Lacal_2463
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Entry
Lacal_2463 CDS
T01533
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
lan
Lacinutrix sp. 5H-3-7-4
Pathway
lan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lacal_2463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lan03019
]
Lacal_2463
03009 Ribosome biogenesis [BR:
lan03009
]
Lacal_2463
Messenger RNA biogenesis [BR:
lan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Lacal_2463
Ribosome biogenesis [BR:
lan03009
]
Prokaryotic type
rRNA helicases
Lacal_2463
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
CMS1
PhoH
Motif
Other DBs
NCBI-ProteinID:
AEH02305
UniProt:
F6GIB9
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All DBs
Position
2732616..2733935
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AA seq
439 aa
AA seq
DB search
MGISKNDIKSQKQILAKLNIEALNPMQEEAQLSINSTANTVLLSPTGTGKTVAFLLPTIA
ELDANVENIQLLILVPSRELAIQIEQVIREMGTGFKANAVYGGRPFSKDKIELAHAPAIL
IGTPGRVADHLRRETFIIEDIKTLVLDEFDKSLEIGFEKEMSEILASLPNIKRRVLTSAT
QDMEIPKFVGLENEITIDYLDTKISNLEIKKVISPDKNKLQTLVDLIHQIGNKPGIIFCN
FKDTIQFVSDFLEDNNIPHGTFYGGLEQIERERALIKFRNGTHQIIIATDLAARGLDIPE
LNFIIHYQLPLKAEEFTHRNGRTARMNAKGTAYVLQWENEYLPEFITTSQIEKLNGKHSN
INSNWSTLFISGGRKDKISKGDIAGLFFKQGNLERNELGVIELKQDCAFVAVPKSKVNSI
ITSTNNTRLKKKKVRVTLI
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgggcattagtaaaaacgacattaaatctcaaaaacaaattcttgctaaactaaatata
gaagcgttaaatcctatgcaggaagaggcacagctatctataaactctacagcaaataca
gtgttgttatcgcctacaggaactggtaaaacggttgcatttttgttaccaaccattgca
gagttagatgccaatgtagaaaatatacaattactaatcttggtaccttctagagaatta
gcaatacaaatagaacaagttattcgtgaaatgggaacaggatttaaagcaaatgctgtt
tatggaggaagacctttttctaaagataaaatagaattagctcatgcgccggcaatttta
ataggaactccaggacgtgttgccgatcatttaaggcgtgaaacttttataattgaagat
ataaaaactttagttttagatgaatttgataaatctctagaaattggattcgaaaaagaa
atgagtgaaattcttgccagcttaccaaacataaaaaggcgtgttttaacctcagcaact
caggatatggaaattcctaaatttgttggtttagaaaatgaaattactattgattatttg
gatactaaaatttcaaatttagaaattaaaaaagtgatttctccagataaaaataagctt
caaaccttagtagatttaatacaccaaataggaaataagccaggaataatattttgtaat
tttaaagatacaatacaatttgtaagtgattttttagaagataataatattccgcacggt
acattttatggtggtttagaacaaattgaaagagaacgtgctcttataaaatttagaaac
ggaacacatcaaataataatagcaacagatttggcagcacgcggtttagatattccagaa
ctaaactttatcattcattatcaactaccattaaaagctgaagagtttacacatagaaat
ggtagaactgctagaatgaatgcaaaaggaacagcttatgttttacaatgggaaaatgaa
tatttaccagaatttataacaacttctcaaattgaaaaattaaacggaaaacattcaaac
ataaacagtaattggtcaacattatttatttctggaggaagaaaagataaaatttctaaa
ggtgatattgcgggtttattttttaaacaaggtaacctggaaagaaacgagttaggtgtt
atagaacttaaacaagactgtgcatttgtagcagttccaaaatctaaagtaaatagcatt
attacaagtacaaacaatacgcgtttaaaaaagaaaaaagttagagtaacacttatttaa
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