KEGG   Lacinutrix sp. 5H-3-7-4: Lacal_2600Help
Entry
Lacal_2600        CDS       T01533                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
lan  Lacinutrix sp. 5H-3-7-4
Pathway
lan03030  DNA replication
lan03410  Base excision repair
lan03420  Nucleotide excision repair
lan03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lan00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Lacal_2600
   03410 Base excision repair
    Lacal_2600
   03420 Nucleotide excision repair
    Lacal_2600
   03430 Mismatch repair
    Lacal_2600
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lan03032]
    Lacal_2600
   03400 DNA repair and recombination proteins [BR:lan03400]
    Lacal_2600
Enzymes [BR:lan01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Lacal_2600
    6.5.1.6  DNA ligase (ATP or NAD+)
     Lacal_2600
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Lacal_2600
DNA replication proteins [BR:lan03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Lacal_2600
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Lacal_2600
DNA repair and recombination proteins [BR:lan03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Lacal_2600
   NER (nucleotide excision repair)
    Other NER factors
     Lacal_2600
   MMR (mismatch exicision repair)
    Other MMR factors
     Lacal_2600
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: AEH02441
UniProt: F6GJJ6
LinkDB All DBs
Position
complement(2890273..2891862)
Genome map
AA seq 529 aa AA seqDB search
MKHFSNLISALEITNKTNAKIEALVNYFKTAPEKDKLWLISIFTGKRPPRPVKSSLMKQW
AFEITKLPEWLFLESYSTVGDLGETIALILPNPTHTIEKPLHQWMQELIALKPKTEEEKK
KYVLNAWSGLEKQERLIFNKLIGGSFRIGVSKKTLVNALSKLSGIDANQLMHSIIGNWNI
ETINFSDLLNGSHINYDNSKPYPFCLAYALEKDLLALGKPEDWQVEYKWDGIRGQIVKRN
NEVYIWSRGEELVTSQFPEIVETITNFKDDFVIDGEILALKDSTVLLFNDLQKRLNRKNI
TKKLLEDIPVGFYAYDLLEYNNQDFRDKPMQERRNQLETLFSTVVINDKLKLSKIINFKN
WEVLKEIRENARTINSEGLMLKQKASPYHVGRKKGDWWKWKVEPLTIDAVMIYAQKGSGR
RSSKYTDYTFAVKKDDGLVTVAKAYSGLTDAEITEISKWVNKNALEKFGPVRTVKPELVF
EIAFEGIAYSKRHKSGVALRFPRIKRWRKDKPVSEIDTIESVTALIEAQ
NT seq 1590 nt NT seq  +upstreamnt  +downstreamnt
atgaaacacttttcaaacttaattagtgctttagaaattactaataaaaccaatgcaaaa
attgaagcattagttaattattttaaaaccgcacctgaaaaagataaactttggttaatt
tctatttttacaggaaaacgaccaccacgacctgtaaaatcgagtttaatgaaacaatgg
gcttttgaaattacaaaacttccagaatggttgtttcttgaaagttatagtacggtgggc
gatttaggagaaactatagcattaatattacctaacccaacacatacaatagaaaaacct
ttacaccaatggatgcaagaattaattgcgttaaaacctaaaacagaagaagagaaaaaa
aaatacgttttaaatgcttggtctggattagaaaagcaagagcgtcttatctttaataaa
ttaattggaggtagttttagaataggtgtttctaaaaaaacattggtaaatgctttatca
aaattatctggaattgatgctaatcaacttatgcacagtataattggaaattggaatatt
gaaaccataaatttttccgatttattaaatggtagtcacattaattacgacaattcaaaa
ccttatccgttttgtttagcttatgctttagaaaaagatttattagcactaggaaaacct
gaagattggcaagtagaatacaaatgggatggtattcgcggacaaattgtaaaacggaat
aatgaggtttatatttggtctagaggtgaagaattagtgacctctcagtttccagaaatt
gttgaaactattactaattttaaagacgattttgtaattgatggtgaaattttagcatta
aaagacagtactgttttactgtttaatgatttacaaaaacgattaaatagaaaaaatata
accaaaaagcttttagaagacatacctgttggattttatgcttacgatttgctagaatat
aacaatcaagattttagagataaaccaatgcaggaaagaagaaatcaacttgaaacatta
ttttcaactgtggttataaacgacaaattaaagctttctaaaataataaattttaaaaat
tgggaagttttaaaagaaattagagaaaatgcacgtacaataaattctgaaggtttaatg
cttaaacaaaaagcttcaccttaccatgttggtcgaaaaaaaggagattggtggaaatgg
aaagtagaaccgctaactatagatgcagtaatgatatatgcgcaaaaaggaagcggaaga
agaagtagcaagtacacagattatacttttgcagtaaaaaaagatgacggtttagttaca
gtggcaaaagcatattctggactaacagatgcagaaataacagaaatttcaaaatgggta
aataaaaatgctttagaaaaatttggacctgtacgtactgtaaaaccagagttggttttt
gaaattgcttttgaaggtattgcatacagtaaacgtcataaatctggagtagcactacgt
tttccaagaattaaacgttggagaaaagataaacctgtaagcgaaatagatactattgag
tctgtaaccgcattaattgaagcacaataa

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